Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g02002 TTAGGTCCTGCAGGCTTCTATGGTAAGGAATGGTTTGATAGCTTCTTACAGAATATAGGACCTGGTGTGGTTGATGGAGTCACTCATCACATATACAACCTTGGTGCTGGTGTTGATAAGGATCTTATCCACAAAGTTCAAGACCCTTATTTTTTGAGTCAAATTGCTCAAACTTTTAAAGATGTCTCGGTAGCTGTCAAGGAATTCACACCATGGGCAGGAGCATGGGTTGGAGAATCTGGCGGAGCTTATAATAGTGGTGGCAAAGATGTGTCACATACTTTTGTTAATGGCTTCTGGTACTTGGATCAACTAGGCATGACATCAACCTTCAACCATAAGGTTTATTGTAGACAAGCTCTTATTGGAGGAAATTATGCTTTGCTTAACACCACAACTTTCATTCCAAATCCTGATTATTATGGAGCGCTTTTGTGGCATCGGCTAATGGGAAGCAATGTGCTCTCTGTCTCTCATGAAGGGTCGCCATATTTGCGTACATATGCTCATTGTTCTAAGAAAGGGCCTGGTATTACTGTGTTGATCATAAACATGTCCAAATCAACATTCAATTTTTCACTTGTGAATGACATGAATCTGTATCCAGAGGATTACACAACAGAAGGTAGTATACAAACAAGTACAAGCAACACGATGGATAAACAAATGAGGGAAGAGTATTTGGACCAACTAGGCATGACATCAACCTTAAATCATAAGGTTTTTTGTAGACAAACTCTTATCGGAGGAAACTATGCCTTGCTAAACACCACAACTTTCATTCCAAATCCTGATTATTATGGTGCTCTTTTGTGGCATCGACTAATGGGAAGCAAATTGCTCTCTATTTCTCATGAAGGGTCTCCAAATTTGCGTGCATATGCTCATTGTTCTAAGAAAGGGCCTGGAATCACTGTGCTAATCATAAACATGTCTAAGTCCACTTCCAATTTTTCACTTGTGAATGACATTAAATAT 978 0.3947 LGPAGFYGKEWFDSFLQNIGPGVVDGVTHHIYNLGAGVDKDLIHKVQDPYFLSQIAQTFKDVSVAVKEFTPWAGAWVGESGGAYNSGGKDVSHTFVNGFWYLDQLGMTSTFNHKVYCRQALIGGNYALLNTTTFIPNPDYYGALLWHRLMGSNVLSVSHEGSPYLRTYAHCSKKGPGITVLIINMSKSTFNFSLVNDMNLYPEDYTTEGSIQTSTSNTMDKQMREEYLDQLGMTSTLNHKVFCRQTLIGGNYALLNTTTFIPNPDYYGALLWHRLMGSKLLSISHEGSPNLRAYAHCSKKGPGITVLIINMSKSTSNFSLVNDIKY 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g02002 326 SUPERFAMILY (Trans)glycosidases 224 276 IPR017853 -
Tsu05g02002 326 Gene3D Glycosidases 215 274 - -
Tsu05g02002 326 PANTHER HEPARANASE-RELATED 214 321 - -
Tsu05g02002 326 PANTHER HEPARANASE-RELATED 1 227 - -
Tsu05g02002 326 PANTHER OS07G0598400 PROTEIN 214 321 - -
Tsu05g02002 326 PANTHER OS07G0598400 PROTEIN 1 227 - -
Tsu05g02002 326 Pfam Glycosyl hydrolase family 79, N-terminal domain 1 106 IPR005199 GO:0016020|GO:0016798
Tsu05g02002 326 SUPERFAMILY (Trans)glycosidases 9 150 IPR017853 -
Tsu05g02002 326 Gene3D Glycosidases 1 148 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g02002 Tsu-Chr5 23133677 23229949 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g02002 227 320 Glycoside Hydrolase AT5G07830 59.574 3.73e-32 124
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g02002 K07964 - gmx:100803057 385.571
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g02002 05 23133677 23229949 Tsu05g02002 05 23133677 23229949 ECH