Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g01955 ATGTCAGACGAGGAACACCATTTTGAGTCCAAAGCTGATGCTGGTGCTTCAAAGACATATCCACAACAAGCTGGTACCATTCGCAAAAATGGTCACATTGTTATCAAAAACAGACCCTGCAAGGTAGTTGAAGTTTCAACTTCCAAAACTGGAAAACATGGACATGCTAAGTGTCACTTTGTTGGTATTGATATCTTCACTGGCAAAAAACTTGAAGATATTGTTCCTTCTTCTCATAATTGTGAtGTAAGTCTGCTGACTGAGAGTGGCAGTACTAAGGATGACCTTAAGCTTCCAACCGATGATGCTCTGCTTACGCAGATAAAGGATGGATTTGGTGAGGGTAAAGATCTGATTGTGTCTGTCATGTCTGCCATGGGCGAGGAGCAGATTTGTGGCCTTAAGGACATTGGTCCCAAGTAA 423 0.4232 MSDEEHHFESKADAGASKTYPQQAGTIRKNGHIVIKNRPCKVVEVSTSKTGKHGHAKCHFVGIDIFTGKKLEDIVPSSHNCDVSLLTESGSTKDDLKLPTDDALLTQIKDGFGEGKDLIVSVMSAMGEEQICGLKDIGPK 140
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g01955 140 ProSitePatterns Eukaryotic initiation factor 5A hypusine signature. 50 57 IPR019769 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
Tsu05g01955 140 Gene3D - 1 81 IPR014722 -
Tsu05g01955 140 SUPERFAMILY Nucleic acid-binding proteins 78 137 IPR012340 -
Tsu05g01955 140 SMART eIF_5a_2 82 135 IPR020189 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
Tsu05g01955 140 PIRSF Transl_init_eIF5A 1 85 IPR001884 GO:0003723|GO:0003746|GO:0043022|GO:0045901
Tsu05g01955 140 PIRSF Transl_init_eIF5A 82 138 IPR001884 GO:0003723|GO:0003746|GO:0043022|GO:0045901
Tsu05g01955 140 SUPERFAMILY Translation proteins SH3-like domain 15 85 IPR008991 -
Tsu05g01955 140 Pfam Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold 83 135 IPR020189 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
Tsu05g01955 140 PANTHER TRANSLATION INITIATION FACTOR 5A FAMILY MEMBER 1 137 IPR001884 GO:0003723|GO:0003746|GO:0043022|GO:0045901
Tsu05g01955 140 MobiDBLite consensus disorder prediction 1 23 - -
Tsu05g01955 140 TIGRFAM eIF_5A: translation elongation factor IF5A 17 86 IPR001884 GO:0003723|GO:0003746|GO:0043022|GO:0045901
Tsu05g01955 140 Gene3D - 82 137 IPR012340 -
Tsu05g01955 140 PANTHER BNAA07G09420D PROTEIN 1 137 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g01955 Tsu-Chr5 22296519 22298855 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g01955 1 140 Eukaryotic Initiation Factors Gene Family AT1G13950 77.987 6.23e-84 241
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g01955 K03263 K02180 pop:7465957 264.618
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g01955 05 22296519 22298855 Tsu04g03729 04 46280840 46283075 PCT