Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g01950 ATGGACCGACCACCGTGGAATGAAGAAGAACAGGCGGTTGACGGTGGACTACCTCCAAGACACAGTTTGACTTTGCCGTCACGTACGGATAACCTTTTTAGCGGTGGTTTTAGCCCTGGTCCTATGACTCTGCTTTCTAATTTATTGACTGATGGTGAAGATGGTAAGTCTTTCTCTCAGCTTCTTGCCGGTGCCATGGCGTCTCCGGCAGCTGGAACAGATGGTTTGCTTGATTCTCCTGGCTTCTTTTCACATCCTCAGGTGTCTTTTGGAATGTCACACCAGCCGCAAGCACTGGCACAGGTCTCGGCTCAAGATATGAATAACCAAGCTGGACATTCATTGTCTGTATCAGCATCCACCGATCACGCTCCTCTTTCCGAACAAAGGCAACAGTCTTCTACGTTGAATGTCGATAAGCCTGCTGATGATGGTTACAATTGGAGGAAGTATGGACAGAAACACGTGAAAGGTAGCGAGTTTCCTCGAAGTTATTATAAGTGCACACATCCTAGCTGTCCTGTCAAGAAAAAGGTTGAGCGCTCACTTGCTGGTCATGTTACTGCAATTATTTATAAAGGAGAGCACAATCATCAACGTCCGAGTAACAAGCGATCAAAAGATACTATGAATTCAAATGACAGTTCAAATATGCAAGGGAATGCTGGTTCGTCTTATCAAGGGATGATGGATCCGGAATCTAGTCAGGCAACAGGTGAACATGTATCCGGAACAAGCGACAGTGAGGATATTGGTGATCGTGGAACTGAAGTGGATGAGAAAGGAGTTGAGCCTGACCCTAAAAGGAGAAATACAGAAATCGGGGTCTCTGATCCTGCAGCTTCTTCACATAGGACTGTAGCGGAGCCTAGAATCATCGTGCAAACAACTAGTGAAGTTGATCTCTTAGATGATGGTTATCGATGGCGAAAatatggacaaaaagttgtcaaaGGCAACCCTTATCCAAGGAGCTATTACAAATGTACAACACAGGGTTGTAACGTTCGAAAGCATGTAGAGAGGGCTTCGACAGATCCTAAAGCAGTTATAACAACGTACGAAGGAAAACATAATCATGATGTGCCAGCAGCTAAGACTAACAGCCACACTATTGCCAACAATAATGCTTCACAGTTAAGATCACAAAATAATATTTCTGAGAAACCTAATTTTGGCAGCATTGGTATTGGCGGCGGAAATGAGCAACAACCAGTTGCCCGTCTAATGCTGAAGGAAGAGCGGATACCTTAA 1254 0.4418 MDRPPWNEEEQAVDGGLPPRHSLTLPSRTDNLFSGGFSPGPMTLLSNLLTDGEDGKSFSQLLAGAMASPAAGTDGLLDSPGFFSHPQVSFGMSHQPQALAQVSAQDMNNQAGHSLSVSASTDHAPLSEQRQQSSTLNVDKPADDGYNWRKYGQKHVKGSEFPRSYYKCTHPSCPVKKKVERSLAGHVTAIIYKGEHNHQRPSNKRSKDTMNSNDSSNMQGNAGSSYQGMMDPESSQATGEHVSGTSDSEDIGDRGTEVDEKGVEPDPKRRNTEIGVSDPAASSHRTVAEPRIIVQTTSEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTTQGCNVRKHVERASTDPKAVITTYEGKHNHDVPAAKTNSHTIANNNASQLRSQNNISEKPNFGSIGIGGGNEQQPVARLMLKEERIP 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g01950 417 MobiDBLite consensus disorder prediction 105 146 - -
Tsu05g01950 417 SUPERFAMILY WRKY DNA-binding domain 140 201 IPR036576 GO:0003700|GO:0006355|GO:0043565
Tsu05g01950 417 ProSiteProfiles WRKY domain profile. 298 363 IPR003657 GO:0003700|GO:0006355|GO:0043565
Tsu05g01950 417 Pfam WRKY DNA -binding domain 304 361 IPR003657 GO:0003700|GO:0006355|GO:0043565
Tsu05g01950 417 Pfam WRKY DNA -binding domain 143 199 IPR003657 GO:0003700|GO:0006355|GO:0043565
Tsu05g01950 417 SUPERFAMILY WRKY DNA-binding domain 295 363 IPR036576 GO:0003700|GO:0006355|GO:0043565
Tsu05g01950 417 MobiDBLite consensus disorder prediction 208 245 - -
Tsu05g01950 417 MobiDBLite consensus disorder prediction 105 140 - -
Tsu05g01950 417 MobiDBLite consensus disorder prediction 1 36 - -
Tsu05g01950 417 MobiDBLite consensus disorder prediction 190 289 - -
Tsu05g01950 417 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 132 416 IPR044810 GO:0003700
Tsu05g01950 417 SMART WRKY_cls 142 200 IPR003657 GO:0003700|GO:0006355|GO:0043565
Tsu05g01950 417 SMART WRKY_cls 303 362 IPR003657 GO:0003700|GO:0006355|GO:0043565
Tsu05g01950 417 ProSiteProfiles WRKY domain profile. 143 201 IPR003657 GO:0003700|GO:0006355|GO:0043565
Tsu05g01950 417 MobiDBLite consensus disorder prediction 246 273 - -
Tsu05g01950 417 PANTHER WRKY TRANSCRIPTION FACTOR 58-RELATED 132 416 - -
Tsu05g01950 417 Gene3D WRKY domain 288 364 IPR036576 GO:0003700|GO:0006355|GO:0043565
Tsu05g01950 417 Gene3D WRKY domain 127 202 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g01950 Tsu-Chr5 22218463 22222956 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g01950 20 62 WRKY Transcription Factor Family AT2G03340 57.447 6.77e-08 52.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Tsu05g01950 WRKY 1.2e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g01950 - - gmx:100127369 604.749