Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g01946 ATGTGGAATAGATCGGATATCAAGGTTCACGTTATCAAAACTAACTTTCACTTTCTTCATGTGCAGATTAAGGAAAGTGACATGGACCCATGTCTTTTAACCGTGGTTTATGCTAGCCCTCGTGAGAATGAAAGAAGTGAGACTTGGCATCAAATTCGGcaattatcaacaaatattACCGAACCTTGGCTTGTGATAGGTGACTTTAATGAGATTGCTAGTCCAGACGAAAAAAAGGGGGGACTGCAAGCAGATATAGGAAAATGTTTGCAATTTAACAAGTGGATCAATGAGTGCAATCTTATGGAGGTCACTACTGCGGAAACAAAGTTTACTTGGAGGGGACCTCAGTGGAATGGAAGGGACAAAGTCTTTAAAAATCTTGATCGAGTTTTGTGTAATGTCTCTTGGAGATTAAAATACCATGAAGGTTTTGCTAAAGTGCTTCCCCGTGTTCAATCCGATCACCATACTATCATTGTTCTTTATGAAGGGGAGCCTAATGAAGGGAGAAATCGACCTTTCAGATTTGAAGCTGCTTGGAATACTCATGAGAATTTTCAACAGGTTCTTCAGGAAAATtggaatagaagaagagatTTGGTGTCTCTCTTAAACAATCTCACTAATAATCTAAAAGTTTGGAACAAAGAGGTGTTTGGaaatatttttaatagaaaGAAGGAGCTTTTGGCAAGACTGAATGGGATCCAGAATAGTCCTAATTATGGCTATAGCAATTTCCTCGAGTCTTTGGAAAAGGAGCTTCAAGACCAACTCGCGACTACTTTTTATCAAGAAGAATGTCTATGGTACCAAAAATCAAGAGGGAAATGGATTGCGGATGGTGACCGAAATATGAAGTACTATCACTCAAAAACAATTGTCAGAAAACGTCGTAACAAGATTGTTTCTCTTAGAAATGAGGCGGGAGATTGGATTGAGGACCAAGAAAATCTCATCAACATGGTAAGGAATTTCTACCTTAATTTATATCATGAGGACAATCCAGTTCGCGACCCTGTTATTTCATGGACAACTTACCCTCATATTCTTGAGACTGAACATCATAAGTTGAGCTCTCCGGTGCATTACTTAGAATGTAAGCAAGCTCTTTTTGATATGGGTCCTTATAAAGCCCATGGCGAGGATGGATTCCCCGCTTTCTTTTTCCAACAAAATTGGGATATTGTAGGTGGCTCTGTGTATCACTATGTGAATCAGTATGCCAAACTCCCAAAGAATCTATGTGATGAAATGGAAAAGATTCAAAGAGGTTTCTTGTGGGGTGACACTGATCAAACTCGAAAACCTCATTTGGTTAGTTGGGAGGTTTGTTATCTGCCAAAAATTGATGGAGGACTTGGCATTAGGAGTCCTCATCAAATGAATGAAGCTTTCCTTATGAAAATGCTTTGGAATATGATCAACAATACAGATGACCTATGGTGCAAAGTTCTTTACAGCAAGTATGGTAGAAACACCGATCTTCGAGTGTCTATGAACACACAACCCTACGATTCTCCTTTGTGGAAAGCCTTGGCAGTGAAGGATATTCTAACCGATGTGGGAGAGTGGGATATCAACTTTCTCACCACTCATCTTCCTCACACCATTGTGAACCAGGTGGTGGCTATACCGGCTCCGAAGGATATAGATGGTCCAGATTTGTTAGGGTGGGGTGGCACAAACACTCGTCATTTTACTGTGGACTGGATCTTCAACAACATATCGGGAGCACACAATAAGGGTTGGCAAACTATTTTTATGGTAACATGCTGGTACTTGTGGATGTGGAGAAACAAGAGTATCTTTGAGGAGGGATTTCGTCGCCCCAATAACCCAACTCATGTGATTCTCAAGATGGTTTCCAAGATCAATAGATGCAATCAAACTCATTTGGATGGAAGGCCTCGGCAAAAAGATACTATTTATATTGGGTGGAAGCAACCTCAAGAAGGATGGATTAAACTCAATTGTGATGGTGCTCATAAAAGCTCTATTAATTTGTCAGGATGTGGAGGTCTCCTTCGAGACAATAATGGTAACTGTTTGAGTAGTTTTGCACGTAAAATTGGCTCCTGCGATGCGCTCCATGCTGAGATGTGGGGAATGTACATCAGAATGAATTTAGCTCATAGACAAGGAATTACCGATCTTCAAGTAGAAAGTGATTCGAAGATGTTGGTCGACATGGTAGAAGGTGGTTTTGCACCAATCACTATTGTCCAAAGCGCGGTAGCAAAAGGAGCTGTTTGTTTGGATGGTAGTCCACCAGCTTACAATTTTCAAAAGGGATATGGAACAGGAATTAACAGTTGGTTAGTTCACATGGAGgGAGGAGGATGGTGCAACAATGTCACTTCTTGCCTTGCTCGTAAGACAACTCGTTTAGGTTCATCGACGAAAATGGGTGATACACTTGCATTTTCCGGAATTTTAAATGACAAGAAACAATTCAATCCAGATTTCTACAATTGGAACAGAATTAAAATAAGATATTGTGATGGTGCATCTTTTACCGGTGATGTGGAAGCGGTCAATCGAGAAACTAAGTTGCATTTTAGAGGAGCAAGAATTTTTGAAGCTGTCATGGAGGACTTGCTAGCAAAAGGAATGAAAAATGCTCAAAATGCTATTATCTCAGGATGTTCCGCTGGAGGATTAACTTCATTACTGCATTGTGATCGATTTCGAGCTCTTCTTCCTAGAGGAGCTAAAGTGAAATGTATCTCAGATGCTGGTTACTTTATCAATGTAAAAGATATATCAGGAGCACAAACCATTGAGCGATATTTCAATCAAATTGTTACCACACATGGGTCTACAAAGAATTTGCCTAGATCATGCACTTCAAGACTCAAACCAGAGCTGTGCTTTTTCCCTCAATATTTTGTATCACAAATCACTACACCAATCTTCTTTGTAAATTCGGAAATCGACTCATGGCAGATTAAGCACATTTTGGCACCAAATGCTGCTGATTGGCATGAATGCAAACTAGATATAAAGAAATGCACTTCTGCTCAACTAAATCAAATCCAAGGCTTTAGAGCAGAATTCCTAAAGGCAATTACTCCTATAGGCAACTCCCCATCCAAAGGAATGTTCTTAGACTCTTGCTATAACCACTGTCAAACCGAATTGCAGGAATTTTGGTTGTATGGTGGCTCTCCATTGTTGGCCAAGACACCGATTGCAAAAGCTGTAGCAGACTGGTTTTATGACAGAAGCCCTTTCCATCAGATAGATTGTCCTTATCCTTGCAATCCAACTTGTAATAACCAAGTTCTTGGAGTTCCTCAGGAAGATGATCCAGAACTATAG 3327 0.3971 MWNRSDIKVHVIKTNFHFLHVQIKESDMDPCLLTVVYASPRENERSETWHQIRQLSTNITEPWLVIGDFNEIASPDEKKGGLQADIGKCLQFNKWINECNLMEVTTAETKFTWRGPQWNGRDKVFKNLDRVLCNVSWRLKYHEGFAKVLPRVQSDHHTIIVLYEGEPNEGRNRPFRFEAAWNTHENFQQVLQENWNRRRDLVSLLNNLTNNLKVWNKEVFGNIFNRKKELLARLNGIQNSPNYGYSNFLESLEKELQDQLATTFYQEECLWYQKSRGKWIADGDRNMKYYHSKTIVRKRRNKIVSLRNEAGDWIEDQENLINMVRNFYLNLYHEDNPVRDPVISWTTYPHILETEHHKLSSPVHYLECKQALFDMGPYKAHGEDGFPAFFFQQNWDIVGGSVYHYVNQYAKLPKNLCDEMEKIQRGFLWGDTDQTRKPHLVSWEVCYLPKIDGGLGIRSPHQMNEAFLMKMLWNMINNTDDLWCKVLYSKYGRNTDLRVSMNTQPYDSPLWKALAVKDILTDVGEWDINFLTTHLPHTIVNQVVAIPAPKDIDGPDLLGWGGTNTRHFTVDWIFNNISGAHNKGWQTIFMVTCWYLWMWRNKSIFEEGFRRPNNPTHVILKMVSKINRCNQTHLDGRPRQKDTIYIGWKQPQEGWIKLNCDGAHKSSINLSGCGGLLRDNNGNCLSSFARKIGSCDALHAEMWGMYIRMNLAHRQGITDLQVESDSKMLVDMVEGGFAPITIVQSAVAKGAVCLDGSPPAYNFQKGYGTGINSWLVHMEGGGWCNNVTSCLARKTTRLGSSTKMGDTLAFSGILNDKKQFNPDFYNWNRIKIRYCDGASFTGDVEAVNRETKLHFRGARIFEAVMEDLLAKGMKNAQNAIISGCSAGGLTSLLHCDRFRALLPRGAKVKCISDAGYFINVKDISGAQTIERYFNQIVTTHGSTKNLPRSCTSRLKPELCFFPQYFVSQITTPIFFVNSEIDSWQIKHILAPNAADWHECKLDIKKCTSAQLNQIQGFRAEFLKAITPIGNSPSKGMFLDSCYNHCQTELQEFWLYGGSPLLAKTPIAKAVADWFYDRSPFHQIDCPYPCNPTCNNQVLGVPQEDDPEL 1108
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g01946 1108 Coils Coil 198 218 - -
Tsu05g01946 1108 CDD RNase_H_like 658 736 IPR044730 -
Tsu05g01946 1108 Gene3D - 654 750 IPR036397 GO:0003676
Tsu05g01946 1108 PANTHER NOTUM-RELATED 728 1101 IPR004963 GO:0016787
Tsu05g01946 1108 PANTHER PECTIN ACETYLESTERASE 728 1101 - -
Tsu05g01946 1108 Gene3D Endonuclease/exonuclease/phosphatase 1 162 IPR036691 -
Tsu05g01946 1108 Pfam Pectinacetylesterase 737 1079 IPR004963 GO:0016787
Tsu05g01946 1108 Pfam Reverse transcriptase-like 659 738 IPR002156 GO:0003676|GO:0004523
Tsu05g01946 1108 SUPERFAMILY Ribonuclease H-like 654 737 IPR012337 -
Tsu05g01946 1108 SUPERFAMILY DNase I-like 11 162 IPR036691 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g01946 Tsu-Chr5 22125089 22134037 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g01946 728 1106 Carbohydrate Esterase AT4G19420 59.091 2.69e-176 521
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g01946 K19882 - gmx:100776478 608.216