Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g01924 ATGATTGTTGGTTATGGGTTattgttgatttcttctttttcctcctcatcttcatcttctccttcaGCATCCATCTTCACAGAAATTTATGCTGCTACGGTTACTGATCTTGATCAGCGGCAAGATAGGGATGATATTGCCATGGTTACTGCTCCTAAGAGGAAGAATGATAATGATTTTAATCATAGTGCTTCTAAGGAAGTCCTGGAAAAGAAAATAGTGCATGTTCATACGGATACCACACAAAATAATACACGGACTGTATATTTAGATATGCCGAAGATGCCAGGGTTGAAGACAGGAGCATGGACACCAGAAGAAGACAAGATGCTTATAGCATATGTAACTCGACATGGCCACGGAAACTGGCACTCTTTGCCCTCTAGAGCAGGTCTGCAAAGATGTGGGAAGAGTTGCAGACGAAGGTGGATTAACTATCTAAGACCTGATGTAAAACGAGGAAACTTTAGCTTGGAGGAAGATCACACTATTATTCAACTGCATGCTCTTCTTGGCAACAAATGGTCAACAATAGCAGCTCTGCTACCAAGAAGAACAGACaatgatataaaaaatcattGGAACACTAACATCAAGAAAAGCCTTATCAGAATGGGGATAGATCCCATCACTCACAAACCAAAATCCAACATCAAAGacaataatatcaatattgcTCTCAAACACAAGGCTCAATGGGAGAGTGTTAGATTGGAAGCTGAAGCAAGATCGTTAATGTTAAGCAAAATTCAAACTCAACATTTAAAATGTTCATCAAGTTCACCAAATTTTTCAATAACCAATGCAATGGATGATAACATGTGTGAGATTATGCTTTCAAATGATGATGACCCTTTATCTTCAATGCATTGCAATGTTTTATACAACAATACTAATAATATCATTGAAACAAATGGACAAGAAATCATGCAAGGTGATGATGATATAATGGTGGCATTGGAAGCATTTAGAGATTCCTTCAATGGTGACACTTTCATAGACTTCAATGTAAATGGAATGTGTAATTTTGATGCTGGCTATGGATTTTCAAATAATGGTCTTTTATAG 1068 0.3502 MIVGYGLLLISSFSSSSSSSPSASIFTEIYAATVTDLDQRQDRDDIAMVTAPKRKNDNDFNHSASKEVLEKKIVHVHTDTTQNNTRTVYLDMPKMPGLKTGAWTPEEDKMLIAYVTRHGHGNWHSLPSRAGLQRCGKSCRRRWINYLRPDVKRGNFSLEEDHTIIQLHALLGNKWSTIAALLPRRTDNDIKNHWNTNIKKSLIRMGIDPITHKPKSNIKDNNINIALKHKAQWESVRLEAEARSLMLSKIQTQHLKCSSSSPNFSITNAMDDNMCEIMLSNDDDPLSSMHCNVLYNNTNNIIETNGQEIMQGDDDIMVALEAFRDSFNGDTFIDFNVNGMCNFDAGYGFSNNGLL 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g01924 355 Gene3D - 155 232 - -
Tsu05g01924 355 ProSiteProfiles Myb-like domain profile. 148 198 IPR001005 -
Tsu05g01924 355 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 148 202 IPR017930 -
Tsu05g01924 355 PANTHER TRANSCRIPTION FACTOR MYB106 96 269 - -
Tsu05g01924 355 SUPERFAMILY Homeodomain-like 97 194 IPR009057 -
Tsu05g01924 355 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 96 269 - -
Tsu05g01924 355 CDD SANT 155 198 IPR001005 -
Tsu05g01924 355 Pfam Myb-like DNA-binding domain 153 196 IPR001005 -
Tsu05g01924 355 Pfam Myb-like DNA-binding domain 100 147 IPR001005 -
Tsu05g01924 355 SMART sant 99 149 IPR001005 -
Tsu05g01924 355 SMART sant 152 200 IPR001005 -
Tsu05g01924 355 ProSiteProfiles Myb-like domain profile. 95 147 IPR001005 -
Tsu05g01924 355 CDD SANT 102 147 IPR001005 -
Tsu05g01924 355 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 95 147 IPR017930 -
Tsu05g01924 355 Gene3D - 100 152 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g01924 Tsu-Chr5 21430460 21437616 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g01924 97 261 MYB Transcription Factor Family AT5G15310 61.404 3.41e-74 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Tsu05g01924 Myb_DNA-binding 1.9e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g01924 K09422 - gmx:100787150 261.151