Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g01920 ATGAGTAGGATGCCTGCAGGGTTGAGGAAAGGACCATGGACACCAGAAGAAGACAAGATGCTTATAGCATATGTAACTCAACATGGTCACGGAAACTGGCACTCTTTGCCCTCTAGAGCAGGTCTGCAAAGATGTGGAAAGAGTTGCAGACGGAGGTGGATTAACTATCTGAGACCTGATTTAAAACGAGGAAACTTCAGCTTGGAGGAAGATCACACTATTAATCAACTGCATGCTCTTCTTGGCAACAACTATATGAGTCGGGATCAAAATGACACCGATGTGTTTGATAATTCTTTACCGAATGATCGTATTACAAAATTGACCATTAAATTCAAAGATACTATAACATAG 354 0.4096 MSRMPAGLRKGPWTPEEDKMLIAYVTQHGHGNWHSLPSRAGLQRCGKSCRRRWINYLRPDLKRGNFSLEEDHTINQLHALLGNNYMSRDQNDTDVFDNSLPNDRITKLTIKFKDTIT 117
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g01920 117 SMART sant 9 59 IPR001005 -
Tsu05g01920 117 SUPERFAMILY Homeodomain-like 11 85 IPR009057 -
Tsu05g01920 117 Pfam Myb-like DNA-binding domain 10 57 IPR001005 -
Tsu05g01920 117 CDD SANT 12 57 IPR001005 -
Tsu05g01920 117 PANTHER TRANSCRIPTION FACTOR MYB106 6 85 - -
Tsu05g01920 117 Gene3D - 10 62 - -
Tsu05g01920 117 ProSiteProfiles Myb-like domain profile. 5 57 IPR001005 -
Tsu05g01920 117 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 6 85 - -
Tsu05g01920 117 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 8 61 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g01920 Tsu-Chr5 21270007 21270847 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g01920 1 110 MYB Transcription Factor Family AT3G01140 54.545 1.10e-41 138
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Tsu05g01920 Myb_DNA-binding 1.2e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g01920 K09422 - gmx:100785734 150.984