Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g01914 atgGAAAGTAGAACATGCTCTGAACTCCCACCTGGATTCAGGTTTCATCCAACTGATGAGGAATTAATTGTTTACTACCTTTGTAACCAAGCAACATCACAACCATGTCCTGCATCTATCATTCCAGAAGttgatatttataaatttgatcCGTGGGAATTACCAgATAAATCAGACTTTGGAGAAAATGAATGGTATTTTTTTAGTccaagagagagaaaatatcCAAATGGGGTTAGACCAAACAGAGCAACTGTTTCTGGGTATTGGAAAGCAACTGGAACAGATAAATCAATATTTAGTGGTTCTAAGCATATTGGTGTTAAGAAAGCTTTGGTTTTTTACAAAGGTAGACCACCAAAGGGAATAAAAACAGATTGGATTATGCATGAATATAGGTTAATTGGATCAAGAAAACAATCCAATAGACAAATTGGATCCATGAGGCTAGATGATTGGGTATTATGTAGAATCTATAAGAAGAAAAACATCACAAAATCATTGGAGACAAATGAGGACTACACAACAAACCAAATCAATATGACACAAACAAATGATGATAGTGAACAAGAATTGGTGAAATTTCCAAGGACATGTTCTCTTACTAATCTTTTGGAAATGGATTATTTGGGACCAATATCACAAATATTATCAGATGGATCATATAATTCaacttttgaatttcaaattaatacTGCACATGGTGGATTAATGGACCCATTTGTAAAATCACAAATGGTTGAAATGCCTAAAAACAACTCTTATGAAGGTGATTTAGAGAAATACCATGTGAAACAAAATAGCAGCCTTGGGAACCAAGCATTTGATCAAAGggaataa 840 0.3167 MESRTCSELPPGFRFHPTDEELIVYYLCNQATSQPCPASIIPEVDIYKFDPWELPDKSDFGENEWYFFSPRERKYPNGVRPNRATVSGYWKATGTDKSIFSGSKHIGVKKALVFYKGRPPKGIKTDWIMHEYRLIGSRKQSNRQIGSMRLDDWVLCRIYKKKNITKSLETNEDYTTNQINMTQTNDDSEQELVKFPRTCSLTNLLEMDYLGPISQILSDGSYNSTFEFQINTAHGGLMDPFVKSQMVEMPKNNSYEGDLEKYHVKQNSSLGNQAFDQRE 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g01914 279 Gene3D NAC domain 18 166 IPR036093 GO:0003677|GO:0006355
Tsu05g01914 279 PANTHER NAC TRANSCRIPTION FACTOR 56 5 232 - -
Tsu05g01914 279 Pfam No apical meristem (NAM) protein 10 134 IPR003441 GO:0003677|GO:0006355
Tsu05g01914 279 SUPERFAMILY NAC domain 5 161 IPR036093 GO:0003677|GO:0006355
Tsu05g01914 279 ProSiteProfiles NAC domain profile. 9 161 IPR003441 GO:0003677|GO:0006355
Tsu05g01914 279 PANTHER BNAC06G30680D PROTEIN 5 232 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g01914 Tsu-Chr5 21082411 21084144 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g01914 1 216 NAC Transcription Factor Family AT1G69490 67.982 5.68e-115 330
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Tsu05g01914 NAM 4e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g01914 - - gmx:732552 469.929
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g01914 05 21082411 21084144 Tsu05g01914 05 21082411 21084144 ECH