Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g01899 ATGAGGCTATGGAACAACAAACGTATCGCAAAAGCAAGAATACAAGCTACACTCAATGCTCGTACTTCCATTGTTACTGCTTCCAACACTACTATGGAGGACGATGCAAGAAAACTACTAGTAGACTCTTATGTTTCTCTCCGTAGGGCTGATACAAATACTAGCAGTAGGGTTGCATATCGTATGACAGTTAGAAGTTTTTCTGATTTTATAACAAGTACAAACCCGTCATGTTCGTTTAGTAGTAAAACTTATGCAAACATCTATAACAAGAGTAGAGTCCACAGTGATATTGATCTATCCAAGTTTAAAGATCAAGATAGGGATGAAGAACCAGGTAGTGGTGATGGAAGTGATAATAAAGATGCTGATGATGGTCAAGTGGAAAGATCTACCGCTCAGCAAGCTGTTCGAACAAACGGTGAGGTGTCTCCTACCTATTTTACCTTGCAATCATCTGTGAGGATTACCAAGGCCCTTGTCATGCGTCTTAGGCAGCACAAGGAGACTATAATGCAAACAGtgaagGAGGTTTACGGAGGCTTGGAGGAGAAGATAGTGGTTCTTATTAAGGAAGTGAATAGGTTGGATTTGAAGAGGGAAGGCGGGAGCTTTGAGGAGGAAGACAATGTGGTACAAAAGAAACTTCTTTGGGAGCTACAAAATCTTCTTCAAAGTAAAGATAATTTGATGTTCCAAAGATCTCGATCCCGGTGGTTGAAGGAAGGGGATGTGAACACCGGTTACTTCCACTCGTGTGTAAATAGTAGAAAGAGGGGTAATGCAATAGTGGCTTTACGTAAATCGGATGGGTGGATTGACAAACCGGAGGAGGTCCGGGGGGAGGTAGTGGAATTTTTTAAGAAACATTATGCCGATGTTAATTGGAGGAGGCCAAAACTTGATGGGGTGGAGTTTTCGTCACTTTCTTTGGCCCAAAAGGAATCTCTTGTATTGCCTTTCTTGGTGGAAGAGGTTAGAGGGGTGGTGGAGGATTCGGATGGTAACAAAAGCACGGGGCCGGATGGATTCAATTTTGCTTTTCTAAAAGGGGCTTGGGATGTTATTAGTGAGGATGTGATGGCTTTTTTGAAAGAGTTTCATGAAAATGCTATTTTACCCAAGGCTTTCTCCTCGTACTTTATTATTCTTATCCCTAAAATTCTAAGTCCTCAATCTTTGGGAGATTTTCACCCTATCTCCCTCTTAGGTAGTATGTACAAGTTGGTTGCAAATGTGTTGACTAAGAGGCTTTGTTTGGTGATGGATTCTCTTATTTCGAAGAACCAATCCGCGTTTATCAAAGGTCGCCTTCTTGTGGATGGGGTACTTGTCATTAACGAGGTGGTTGATTGGGtgaagaaagcaaaaaaaaagtgtgtaaTCTTTAAGGTGGACTTGGAGAAGGCTTACGACTCTGTAAGTTGGAGCTACTTGGATTATATGCTTCAAAGGTTTGGTTTTGACGGGAAATGGAGGAGTTGGATTAGGGCTTGTGTGTTTGCGGGGAGCCTCTCGGTGTTGGTTAATGGTAGTCCAACGGAACAAATTGATATAAGTAAGGGGCTAAAACAAGGTGATCCTCTTgctccttttctttttatccTTGTGGCGGAAGGGTTAGGAGCACTTATGAAGAAAGCGGTGGATCTTGGGTTTTATAAAGGGATTCAAATTTGTAGCTCGGGTGTTAATATTTCGCATCTCCAATATGCCGACGACACACTTTTTGTTGGAGACGCATGCGTTGAGAATTTTTGGACTACAAAAGCAATTTTGAGGTGGTTTGAACTTATCTTCGGGCTTAAAGTGAACTTTTTCAAGAGTAAACTCTATGGGATAAATGTGGAGGATGGATTTATTAACTCTTCGGCATTGTTTCTGAAATGTAAAGTTGGGAGGTCTCCGTTTATTTATCTTGGGCTCCCGGTTGGGGCTAACCCTAGGCGTTTGGCAACTTGGAATCTGGTTCTTGAGTGGGTGTTTGGAAGAAAATTGTTAGGTTGCAAAGGAGGTTTCTTTGGGGTGGGGCAACCGGGGGTTCAAAAACCCTCTAGGATCGTAAGAACCTATGACCCGATGCAAGAACCTGACTACAGACAGGTCAAAAAAGGAACCTCATGGGTTCTAAGCTCGTTTGGCCATCTCGAGCTCGTAGGATAG 2163 0.4175 MRLWNNKRIAKARIQATLNARTSIVTASNTTMEDDARKLLVDSYVSLRRADTNTSSRVAYRMTVRSFSDFITSTNPSCSFSSKTYANIYNKSRVHSDIDLSKFKDQDRDEEPGSGDGSDNKDADDGQVERSTAQQAVRTNGEVSPTYFTLQSSVRITKALVMRLRQHKETIMQTVKEVYGGLEEKIVVLIKEVNRLDLKREGGSFEEEDNVVQKKLLWELQNLLQSKDNLMFQRSRSRWLKEGDVNTGYFHSCVNSRKRGNAIVALRKSDGWIDKPEEVRGEVVEFFKKHYADVNWRRPKLDGVEFSSLSLAQKESLVLPFLVEEVRGVVEDSDGNKSTGPDGFNFAFLKGAWDVISEDVMAFLKEFHENAILPKAFSSYFIILIPKILSPQSLGDFHPISLLGSMYKLVANVLTKRLCLVMDSLISKNQSAFIKGRLLVDGVLVINEVVDWVKKAKKKCVIFKVDLEKAYDSVSWSYLDYMLQRFGFDGKWRSWIRACVFAGSLSVLVNGSPTEQIDISKGLKQGDPLAPFLFILVAEGLGALMKKAVDLGFYKGIQICSSGVNISHLQYADDTLFVGDACVENFWTTKAILRWFELIFGLKVNFFKSKLYGINVEDGFINSSALFLKCKVGRSPFIYLGLPVGANPRRLATWNLVLEWVFGRKLLGCKGGFFGVGQPGVQKPSRIVRTYDPMQEPDYRQVKKGTSWVLSSFGHLELVG 720
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g01899 720 CDD RT_nLTR_like 382 644 - -
Tsu05g01899 720 PANTHER OS01G0158850 PROTEIN 152 644 - -
Tsu05g01899 720 MobiDBLite consensus disorder prediction 100 128 - -
Tsu05g01899 720 ProSiteProfiles Reverse transcriptase (RT) catalytic domain profile. 366 644 IPR000477 -
Tsu05g01899 720 Pfam Reverse transcriptase (RNA-dependent DNA polymerase) 394 643 IPR000477 -
Tsu05g01899 720 PANTHER REVERSE TRANSCRIPTASE ZINC-BINDING DOMAIN-CONTAINING PROTEIN-RELATED-RELATED 152 644 - -
Tsu05g01899 720 SUPERFAMILY DNA/RNA polymerases 452 643 IPR043502 -
Tsu05g01899 720 MobiDBLite consensus disorder prediction 100 139 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g01899 Tsu-Chr5 20884339 20888510 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g01899 35 182 Core DNA Replication Machinery Family AT5G44635 33.526 3.17e-15 77.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g01899 - - lang:109337317 437.573