Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g01898 ATGGcttcaattatttttctcttgaTGGTATTACTCACAATGTTTTCCTCTGCTTATGGCTATGGTGGAGGATGGATTAATGCACATGCAACTTTCTATGGAGGAAGTGATGCATCAGGAACAATGGgtggGGCATGTGGATATGGTAACCTTTATAGTCAAGGGTATGGAACAAATACTGCTGCTTTAAGCACAGCTTTGTTCAACAGTGGTTTAAGCTGTGGTTCTTGTTTTGAGATTATGTGTGTTGGTGACCGTAAATGGTGTCTTCCTGGTTCTATTTTGGTTACTGCTACTAATTTCTGTCCACCAAACAATGCCTTACCTAATAATAATGGTGGATGGTGTAACCCTCCTTTACATCACTTTGATCTTGCTCAACCTGTTTTTCTAAGAATTGCTCAATACAAAGCTGGAATTGTTCCTGTTTCTTACAGAAGGGTACCCTGCAGAAGAAGGGGAGGAATTAGGTTCACAATCAATGGACATTCCTACTTCAATTTAGTTCTAGTAACAAATGTAGGAGGTGCTGGTGATGTACATTCAGTGGCTATTAAAGGATCAAGAACAGGGTGGATGCCAATGTCAAGAAACTGGGGACAAAATTGGCAAAGCAACAATTACCTTAATGGGCAAACTTTGTCTTTCAAGGTCACAACAAGTGATGGCAAAACAGTAATTTCCAACAATGTTGCTCCATCTGGTTGGTCCTTTGGTCAAACCTACACTGGTGCTCAATTCCGCTAA 747 0.3936 MASIIFLLMVLLTMFSSAYGYGGGWINAHATFYGGSDASGTMGGACGYGNLYSQGYGTNTAALSTALFNSGLSCGSCFEIMCVGDRKWCLPGSILVTATNFCPPNNALPNNNGGWCNPPLHHFDLAQPVFLRIAQYKAGIVPVSYRRVPCRRRGGIRFTINGHSYFNLVLVTNVGGAGDVHSVAIKGSRTGWMPMSRNWGQNWQSNNYLNGQTLSFKVTTSDGKTVISNNVAPSGWSFGQTYTGAQFR 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g01898 248 PANTHER EXPANSIN-A15 8 248 IPR002963 GO:0009664
Tsu05g01898 248 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 43 155 IPR007112 -
Tsu05g01898 248 SUPERFAMILY PHL pollen allergen 152 244 IPR036749 -
Tsu05g01898 248 Gene3D - 155 247 IPR036749 -
Tsu05g01898 248 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 165 244 IPR007117 -
Tsu05g01898 248 SMART dpbb_1 60 145 IPR007112 -
Tsu05g01898 248 Gene3D - 11 151 IPR036908 -
Tsu05g01898 248 PANTHER EXPANSIN-A10 8 248 - -
Tsu05g01898 248 SUPERFAMILY Barwin-like endoglucanases 9 173 IPR036908 -
Tsu05g01898 248 PRINTS Expansin/Lol pI family signature 64 82 IPR007118 GO:0005576
Tsu05g01898 248 PRINTS Expansin/Lol pI family signature 192 206 IPR007118 GO:0005576
Tsu05g01898 248 PRINTS Expansin/Lol pI family signature 230 244 IPR007118 GO:0005576
Tsu05g01898 248 PRINTS Expansin/Lol pI family signature 42 60 IPR007118 GO:0005576
Tsu05g01898 248 PRINTS Expansin/Lol pI family signature 24 39 IPR007118 GO:0005576
Tsu05g01898 248 PRINTS Expansin/Lol pI family signature 138 154 IPR007118 GO:0005576
Tsu05g01898 248 Pfam Lytic transglycolase 60 145 IPR009009 -
Tsu05g01898 248 Pfam Expansin C-terminal domain 156 233 IPR007117 -
Tsu05g01898 248 PRINTS Expansin signature 55 69 IPR002963 GO:0009664
Tsu05g01898 248 PRINTS Expansin signature 113 130 IPR002963 GO:0009664
Tsu05g01898 248 PRINTS Expansin signature 154 166 IPR002963 GO:0009664
Tsu05g01898 248 PRINTS Expansin signature 166 187 IPR002963 GO:0009664
Tsu05g01898 248 PRINTS Expansin signature 230 246 IPR002963 GO:0009664
Tsu05g01898 248 PRINTS Expansin signature 94 104 IPR002963 GO:0009664
Tsu05g01898 248 PRINTS Expansin signature 130 143 IPR002963 GO:0009664
Tsu05g01898 248 PRINTS Expansin signature 82 93 IPR002963 GO:0009664
Tsu05g01898 248 PRINTS Expansin signature 201 222 IPR002963 GO:0009664
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g01898 Tsu-Chr5 20867566 20870093 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g01898 1 248 Expansin Gene Family AT2G03090 81.452 2.73e-153 425
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g01898 - - gmx:100796316 470.314
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g01898 05 20867566 20870093 Tsu05g01898 05 20867566 20870093 ECH
Tsu05g01898 05 20867566 20870093 Tsu03g01624 03 16194934 16197323 ECH
Tsu05g01898 05 20867566 20870093 Tsu04g00165 04 1581847 1584267 ECH
Tsu05g01898 05 20867566 20870093 Tsu06g02121 06 26605037 26607716 ECH