Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g01897 aTGGGGAGGGTAAAGCTAAAGATTAAGAGGTTGGAGAACACAAATGGAAGACAAGCAACCTATGCAAAAAGGAAGAATGGAATAATGAAGAAAGCAAGTGAATTATCTATATTGTGCGATATAGATATTATACTTCTCATGTTCTCTCCCGGCGGAAAACCTTCATTATGCACCGGGAGACGCAACAACTTTGAGGATGTGATTTCAAAGTTTGCTCAACTAACCTCACAAGAAAGGGCAAAGAGTAATGATTTTTGTTTGAGAATTCAGGCACTAAAGAAAACATTTAAGAAGTTAGATCATGATGTGAATATACAAGACTTTTATGGTACAAGTTGTAAGCTAATCTCAAACAAATTCTTTGTTGTTGGATTCTGCAGCCATTGGAGTGACATTGAAAAAATTAGCAGTGTGGATGAATTGGGACAGATGGAAAATTCACTCAAGGAGTctcttaataaaattaatacacACAAGGAAAATGTACAAAAGCAACAATTGGCATCACTGCAATGCAATAATCAGTTCAATGAAATGCATGTTCCCTACAAAATGAATGCTCAACAGCATCTACAATCTCTATCATGGATTGTTAATGGTGACAGCCAGAATATAGTACTACCTGAAGACTCAAACTTGCTTCTCCCCAAAGATGTAGAGGGCTCAACAAACTCATCATTTGGAAGCTATGCAAGTTATCTTGGCtcaaacacaaaaccaaacatttCCAATTCAGCTCAAGAAAATTGTGTTCTTAGTGACATGAGCAATAATGCTACCAATGCTCCTGTCAGGCTACAATTTAATGGACAATTTCCATACATACCAAACAATTTCAACATAATGAATGATATGAAACTCCAACCAGTTCCACCAATGAATAATAATCCACATGAAAATCAAGTAGATCATAACTATCATGTGAATGGAAACTTTGAAGCACCTAAACAAGTGTTTGATCAAACTAATCACCATGGTTGGAATACTAATTCAGGTCCTTGTGCTGTTAATATCTTTGATGAACATTTGTATCCACAGCCAAATTTTCCACAAGTGCATTTTGGCTTCACatag 1074 0.3492 MGRVKLKIKRLENTNGRQATYAKRKNGIMKKASELSILCDIDIILLMFSPGGKPSLCTGRRNNFEDVISKFAQLTSQERAKSNDFCLRIQALKKTFKKLDHDVNIQDFYGTSCKLISNKFFVVGFCSHWSDIEKISSVDELGQMENSLKESLNKINTHKENVQKQQLASLQCNNQFNEMHVPYKMNAQQHLQSLSWIVNGDSQNIVLPEDSNLLLPKDVEGSTNSSFGSYASYLGSNTKPNISNSAQENCVLSDMSNNATNAPVRLQFNGQFPYIPNNFNIMNDMKLQPVPPMNNNPHENQVDHNYHVNGNFEAPKQVFDQTNHHGWNTNSGPCAVNIFDEHLYPQPNFPQVHFGFT 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g01897 357 CDD MADS 2 54 - -
Tsu05g01897 357 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Tsu05g01897 357 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Tsu05g01897 357 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Tsu05g01897 357 SUPERFAMILY SRF-like 1 81 IPR036879 GO:0003677|GO:0046983
Tsu05g01897 357 Coils Coil 141 168 - -
Tsu05g01897 357 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL30 1 332 - -
Tsu05g01897 357 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Tsu05g01897 357 PANTHER MADS BOX PROTEIN 1 332 - -
Tsu05g01897 357 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 54 IPR002100 GO:0003677|GO:0046983
Tsu05g01897 357 ProSiteProfiles MADS-box domain profile. 1 53 IPR002100 GO:0003677|GO:0046983
Tsu05g01897 357 Gene3D - 14 96 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g01897 Tsu-Chr5 20861310 20864895 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g01897 1 350 Type I MADS-box Gene Family AT2G03060 42.037 3.46e-78 243
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Tsu05g01897 SRF-TF 1.9e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g01897 - - lang:109356063 476.092