Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g01896 ATGGCGATAATCGAACTATATCCCAAATTCTTCTTCCCCCAAACCCCAATTTCAAAACCCTtcataaaccctaatttcaatcCCAAAACTAAAAAATCTTATCAAATTTCCAAACTAATTGCTCAATTTTCTCATCAACCAACAACCACCACCACAAACCGTGGCATAATTTTCCGGGAAAAAGTTATTTACCTCGAGAAACTCAAAGTGAACCCAGAAAAAGCCTTCAAACAAAACCCTAATCTTCGATGTGTTCCTCTAACAACCCTAAAATCGGTTGAACAATGTCTTTCATCAATTGGCATACATAGAAGTCAAATGGGTCGAATTCTCGATATGCTTCCTGAACTTCTCACGTGTGAACCACACAATGACATTTACCCCCTTCTTGATTTTCTTCTCAATGAGGTTGAAATTCCTTACCATCATGTTCAAAAATCAATCTTGCGGTGTCCTAGATTGTTGGTTAGTAGTATTGAGAATCGATTAAGACCTGCACTTTGTTATTTGAGAGAATTAGGGTTTGTTGGGCGACATTCTCTCACGTGCCAAACTACATTGCTTTTGATTTCAAGTGTTGAGGATACCCTTATGCCTAAAGTTGAATTTTTGACGGGTTTGGGGTTCACACGTGCTGAGGTTTCGAAAATGGTTTTGAGGTCACCTGGGTTGTTGACTTATAGTGTGGCTAATAATTTGGTTCCAAAACTTGATTTTTTCTTGAATGAGATGAATCGTGATGTTGCTGAATTGAAGAGGTTTCCTCAGTTTTTCTCTTTTAGCTTGGAAGGGAGGATTAAGCCGAGATATGCTATGTTGGTTCGGCTTGGTTTGTCGCTTCCTTTGCAAGAAATGTTGCAGGTTAGTGATGGAGGGTTTGATTCTATGTTGCTTGAATTGAGGTTTAGTCAACTTGAGGTATGA 924 0.381 MAIIELYPKFFFPQTPISKPFINPNFNPKTKKSYQISKLIAQFSHQPTTTTTNRGIIFREKVIYLEKLKVNPEKAFKQNPNLRCVPLTTLKSVEQCLSSIGIHRSQMGRILDMLPELLTCEPHNDIYPLLDFLLNEVEIPYHHVQKSILRCPRLLVSSIENRLRPALCYLRELGFVGRHSLTCQTTLLLISSVEDTLMPKVEFLTGLGFTRAEVSKMVLRSPGLLTYSVANNLVPKLDFFLNEMNRDVAELKRFPQFFSFSLEGRIKPRYAMLVRLGLSLPLQEMLQVSDGGFDSMLLELRFSQLEV 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g01896 307 Gene3D Transcription termination factor 3, mitochondrial 73 305 IPR038538 -
Tsu05g01896 307 PANTHER TRANSCRIPTION TERMINATION FACTOR MTEF1, CHLOROPLASTIC 36 305 - -
Tsu05g01896 307 Pfam mTERF 74 175 IPR003690 GO:0003690|GO:0006355
Tsu05g01896 307 Pfam mTERF 144 293 IPR003690 GO:0003690|GO:0006355
Tsu05g01896 307 PANTHER CGI-12 PROTEIN-RELATED 36 305 IPR003690 GO:0003690|GO:0006355
Tsu05g01896 307 SMART mt_12 179 210 IPR003690 GO:0003690|GO:0006355
Tsu05g01896 307 SMART mt_12 73 103 IPR003690 GO:0003690|GO:0006355
Tsu05g01896 307 SMART mt_12 215 247 IPR003690 GO:0003690|GO:0006355
Tsu05g01896 307 SMART mt_12 145 176 IPR003690 GO:0003690|GO:0006355
Tsu05g01896 307 SMART mt_12 248 279 IPR003690 GO:0003690|GO:0006355
Tsu05g01896 307 SMART mt_12 108 140 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g01896 Tsu-Chr5 20857419 20858715 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Tsu05g01896 mTERF 1.5e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g01896 K15032 - gmx:100785219 369.777