Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g01893 ATGCAAATGGTATATTCAGACCTTGGATCTCTCTCTCTTAGTTCTTCTAACTATGGTGTAGTTTCTTCAAGTTCAAGTGCATCAAGATGGAGTAATTCTTTTCCATTTATGAGAGAGTCTTTTCTTTCTAAAggatttgaagaagaagaagaagaaaaaatggatGATGATATTATTATGGAAGGAAAAGGTTCTTATTGTAGTGAGGATGGAGAAAATAATAGTGAGAAAacaaatcatcataataatattaactTCAATGATGAGTTAGAGAACCCTAATGGAAGTGGTAAAGATGAAGATAATGGACAATCTAGTAAATGTGCTAGAGGACATTGGAGACCTGCTGAAGATTCTAAGCTTAAAGAACTTGTTGCTCTTTATGGTCCTCAGAATTGGAATCTCATAGCTGAAAATTTGGAAGGAAGATCTgGCAAGAGTTGTAGGCTAAGATGGTTCAACCAATTGGATCCAAGAATCAATAGAAGAGCATTCaatgaagaagaggaagaaagaCTAATGCAAGCACATAGAATTTATGGAAACAAATGGGCCATGATAGCAAGACTATTCCCAGGAAGAACAGACAATGCTGTAAAGAATCACTGGCATGTTATAATGGCAAGAAAGTACAGAGAACAATCCAATGCATACAGGAGAAGAAGATTAAGCCAAAATGTTTACAGAACAATGGATCAAAATCCAAACTTTATCTGCAGGGACACTACAACTACAACAATGGAAACAGAATCATCATCACCTTATTTTCTTAATGGAGCCCCACTTGGAAATAGTATGTCCATTTTCCCATATGCTACTTCTTTCCAACATGGTGTTCATGGTGGTGGGGTTGATTATGGTTTAAATGTTTTACCTCACATGAGTGGTGAGAGAGAAGCTATTCAAGGACCCCTACATGTTGGTCTCTATGCTCAACAAGCACCATTTGATTTCTTCTCTGGTGGTAGAAGTAATGGTATGGTGATGAAAGAGTCTTTCAATCATAACAATTATTGGGATGGGACAAATGATgaatatcaacaacaacaacatcatcaacaactaTCTAGTTTTTACCATCATTATCCTCAACAACAATATCTCATGTCAATGCAACATCAACAACTAAACAATCACAATTTTTACAACTTCTCAACAAATTCATCAGCATCATcaacacatcatcatcataatggTGAAAACAGTGAAAAAGTTGTGATTGGTGACACCCCAGATGCTGTTCAAACTCCTCCTCAATTTTTTGACTTCCTTGGAGTAGGTGCTACATGA 1290 0.3302 MQMVYSDLGSLSLSSSNYGVVSSSSSASRWSNSFPFMRESFLSKGFEEEEEEKMDDDIIMEGKGSYCSEDGENNSEKTNHHNNINFNDELENPNGSGKDEDNGQSSKCARGHWRPAEDSKLKELVALYGPQNWNLIAENLEGRSGKSCRLRWFNQLDPRINRRAFNEEEEERLMQAHRIYGNKWAMIARLFPGRTDNAVKNHWHVIMARKYREQSNAYRRRRLSQNVYRTMDQNPNFICRDTTTTTMETESSSPYFLNGAPLGNSMSIFPYATSFQHGVHGGGVDYGLNVLPHMSGEREAIQGPLHVGLYAQQAPFDFFSGGRSNGMVMKESFNHNNYWDGTNDEYQQQQHHQQLSSFYHHYPQQQYLMSMQHQQLNNHNFYNFSTNSSASSTHHHHNGENSEKVVIGDTPDAVQTPPQFFDFLGVGAT 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g01893 429 PANTHER MYB TRANSCRIPTION FACTOR 1 429 - -
Tsu05g01893 429 SUPERFAMILY Homeodomain-like 109 203 IPR009057 -
Tsu05g01893 429 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 105 156 IPR017930 -
Tsu05g01893 429 CDD SANT 113 154 IPR001005 -
Tsu05g01893 429 SMART sant 161 209 IPR001005 -
Tsu05g01893 429 SMART sant 109 158 IPR001005 -
Tsu05g01893 429 Gene3D - 110 161 - -
Tsu05g01893 429 MobiDBLite consensus disorder prediction 68 102 - -
Tsu05g01893 429 Gene3D - 163 233 - -
Tsu05g01893 429 ProSiteProfiles Myb-like domain profile. 157 207 IPR001005 -
Tsu05g01893 429 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 157 211 IPR017930 -
Tsu05g01893 429 MobiDBLite consensus disorder prediction 62 114 - -
Tsu05g01893 429 ProSiteProfiles Myb-like domain profile. 105 156 IPR001005 -
Tsu05g01893 429 MobiDBLite consensus disorder prediction 384 404 - -
Tsu05g01893 429 Pfam Myb-like DNA-binding domain 113 173 - -
Tsu05g01893 429 CDD SANT 164 204 IPR001005 -
Tsu05g01893 429 PANTHER MYB PROTEIN-RELATED 1 429 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g01893 Tsu-Chr5 20810106 20812814 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g01893 103 238 MYB Transcription Factor Family AT1G69560 78.261 7.31e-76 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Tsu05g01893 Myb_DNA-bind_6 1.4e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g01893 K09422 - gmx:100789305 408.297
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g01893 05 20810106 20812814 Tsu05g01893 05 20810106 20812814 ECH