Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g01887 ATGAAGAATCAAAGTATGCATTTTGTTCTATCAACTGATTCAAAACCAAGACTCAGATGGACTACTGATCTTCATCAAAGATTCATTGATGCAATTAATCAACTTGGAGGTGCAGATAAAGCAACACCAAAGAGTATAATGAGAGTGATGGAAATTCCAGGACTTACTTTGTACCATCTCAAGAGCCATTTACAGAAATATCGACTTGGGAAAGGCCAACAAGAAGAAACCTATTCCGACAACAAACAACAAGAAACCAAGAGTAATGATGATCATTGTAGCAGAGAAATCAGTCTTGGGGACCAGAGTCAAATCACTGAAAACTTGGAGATAGCTCAAGCTCTAGAAATGCAAATGGAAGTAGAGAAGAAACTTTATGAACAAATTGAGGTGCAGAAACATTTGCAGCTTCGAATCGAAGCTCAAGGAAAGTATTTACAATCAGTACTAACGAAGGCGCAAGAAGCACTTTGTGGACACAATTCTTCTCCAATTGGTATAAAACTCACAAAAGATGAACTCTCTCGACTAGTTACCATGGTCAACAATGTTTGTCCAAGTTCTCCAATCTCAGAACTAACAGAAACAAGAGGAATAAGCTTAAACTGTAGTAAGTGGAAACAGAACAATGAAACTATGTGTTCACTAGAAAGTTCTTTGACATCTTCTGAAAGCtcagaaagaaaagaagagaaaaattcaaTAGAAGAAATAGTAGAGTTAAAAAATTCCAATACTATTTCACTTGGATTACCACTAATGGCCATGCACTCTGAAGAAAAAGCAGTGTCGTGTCCGATGTCTGTGTCTGTGTCTCGAAAGAGAAATGCAGAAACTAAATTTGATGGTAGCTGTGTTGAGGAATCTTCAAACAGGAAAAGATGTGGcaacaagttgaagaaagctaAGTTGTCAGAAGAAATGTTTGACTTGAACAGACAATGTCAGAATGATATGGAATCAACAAGCtcaaaaatattactattagaCTTAAATTGCAGTTTAAACTTTTGTGAACCATGA 1023 0.346 MKNQSMHFVLSTDSKPRLRWTTDLHQRFIDAINQLGGADKATPKSIMRVMEIPGLTLYHLKSHLQKYRLGKGQQEETYSDNKQQETKSNDDHCSREISLGDQSQITENLEIAQALEMQMEVEKKLYEQIEVQKHLQLRIEAQGKYLQSVLTKAQEALCGHNSSPIGIKLTKDELSRLVTMVNNVCPSSPISELTETRGISLNCSKWKQNNETMCSLESSLTSSESSERKEEKNSIEEIVELKNSNTISLGLPLMAMHSEEKAVSCPMSVSVSRKRNAETKFDGSCVEESSNRKRCGNKLKKAKLSEEMFDLNRQCQNDMESTSSKILLLDLNCSLNFCEP 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g01887 340 Gene3D - 14 72 - -
Tsu05g01887 340 PANTHER MYB-LIKE TRANSCRIPTION FACTOR FAMILY PROTEIN 2 329 - -
Tsu05g01887 340 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 2 329 IPR044848 GO:0003700
Tsu05g01887 340 Coils Coil 112 132 - -
Tsu05g01887 340 Pfam MYB-CC type transfactor, LHEQLE motif 110 155 IPR025756 -
Tsu05g01887 340 SUPERFAMILY Homeodomain-like 14 69 IPR009057 -
Tsu05g01887 340 MobiDBLite consensus disorder prediction 71 97 - -
Tsu05g01887 340 Pfam Myb-like DNA-binding domain 18 68 IPR001005 -
Tsu05g01887 340 MobiDBLite consensus disorder prediction 71 99 - -
Tsu05g01887 340 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 15 70 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g01887 Tsu-Chr5 20741760 20743833 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g01887 6 239 G2-like Transcription Factor Family AT1G69580 49.458 5.08e-75 233
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Tsu05g01887 Myb_DNA-binding 1.1e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g01887 - - mtr:MTR_5g041350 502.671
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g01887 05 20741760 20743833 Tsu05g01887 05 20741760 20743833 ECH