Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g01885 ATGGCTTCTGAAGCTGAAATTTCTGAACTTTCTTCTTTGTTTGAAAGAATGATCAGAAACAGAGACATGTCACTGTTTTTACCTTTTATCTTTGGTCTTTCAGAATCTTCTAGAAATAACGACGACCCAGATCAAGAATCTGAAAGTAACGATGATTCCAACCGTCAAAGAATAATCTTGGTGAATCCCTTAACACAGGGTATGGCTGTGATTGAAGGAGTTTCAAGTCTTGAAGATTTGGTAAATCAACTTGGGAGTAACAAGAATGGTCAACCACCAGCTTCAAAGGAGTCAATTGAAGCTATGGAGAAAGTTGAAATTAGAGAAGGTGATGATGGTGGTGAGTGTGTTGTTTGTTTGGATGAATTTGAGGTTGGTGGAGTTGTTAAAGAGATGCCTTGTAAACATAGGTTTCATGGTGATTGTATTGAGAAGTGGTTAGGGCTTCATGGGTCTTGTCCTGTTTGTAGGTATCAAATGCCTGTTGATGAGAAAGGTGATGGAAGGAAAAgtgatgaagaagaaagtgGAGAGAGGAGAAGGGTTGGTGGCGGTGGCAATGGTAATGGTAATGGTGAAGTTTGGGTTAGTTTTTCTATTAATAGGAGGAGTAgggaaaatcaaaatcaagctACTTCTGGTGGTGATTcaagtgatgatgatgttgagaattaa 675 0.357 MASEAEISELSSLFERMIRNRDMSLFLPFIFGLSESSRNNDDPDQESESNDDSNRQRIILVNPLTQGMAVIEGVSSLEDLVNQLGSNKNGQPPASKESIEAMEKVEIREGDDGGECVVCLDEFEVGGVVKEMPCKHRFHGDCIEKWLGLHGSCPVCRYQMPVDEKGDGRKSDEEESGERRRVGGGGNGNGNGEVWVSFSINRRSRENQNQATSGGDSSDDDVEN 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g01885 224 Pfam Ring finger domain 115 157 IPR001841 -
Tsu05g01885 224 MobiDBLite consensus disorder prediction 192 217 - -
Tsu05g01885 224 MobiDBLite consensus disorder prediction 35 55 - -
Tsu05g01885 224 ProSiteProfiles Zinc finger RING-type profile. 116 157 IPR001841 -
Tsu05g01885 224 SMART ring_2 116 156 IPR001841 -
Tsu05g01885 224 PANTHER - 9 171 - -
Tsu05g01885 224 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 81 163 IPR013083 -
Tsu05g01885 224 MobiDBLite consensus disorder prediction 160 224 - -
Tsu05g01885 224 MobiDBLite consensus disorder prediction 39 53 - -
Tsu05g01885 224 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 9 171 - -
Tsu05g01885 224 SUPERFAMILY RING/U-box 106 162 - -
Tsu05g01885 224 MobiDBLite consensus disorder prediction 162 181 - -
Tsu05g01885 224 CDD RING-H2_PA-TM-RING 115 157 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g01885 Tsu-Chr5 20730261 20731059 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g01885 1 224 C3H Transcription Factor Family AT1G26800 50.000 3.39e-62 191
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g01885 - - lang:109356689 264.233
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g01885 05 20730261 20731059 Tsu05g01885 05 20730261 20731059 ECH