Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g01864 ATGTTGAATGTTGATGTAATTGGTaacaagaaaaggaaaagatgtgGTAGAGTTTTTAGGTTCAAGAATTTTGGTGAACAAGGGTACCCCGTTATGTTTAATGGAACATCATTTCGTGAGAATGTTAATGCTTTACTTGAATATGCAAATTTGGAGAGTAATTTAAATATGGGAATGGCAATGTGGTCTTTTCAACTTGAATTGCATCATCATCCACCTTTGCATATTTTGTTGTTTGTGATTGAAGAATCTATTGAGGCTGCTCTTAATCGTCATTGCAACCATTGTCAATACGTTGGGTGGGGCAACCATTTCATTTGCAATAAGAAGTATCATTTCCTATTACCCTCAAAGGAAGCACTAAATAGCTGCACAAGCTGTGAAAGTTGTTGTGATTCAATTGGTACAATGAAATTAATAGAATTAGAGGGACATATGATGCATGGTGTATTTCACTCTAATGGATTTGGACATTTGCTATGTGTTAATGGGTTGGAAACTGGTTCCAATTTGGGTGGGAATCAAATCATGGAGTTTTGGAATCGTTTGTGCAATGGATTGCAAGCAAGGAAAGTGAGTTTGAATgacacatcacaaaaaagaggcATGGAATTGAGACTTGTGAATGGAATAGCATACAGTGAGCCATGGTTTGGTCGTTGGGGATATAAATTTGGTCGAGGATGTTTTGGTGTAACACAATCAATGTACCAAAAAGCCATAGAAGCAATAAGAAGCATGCCACTATACCTACTCACACACCACATTGCAAATTTCAATCATGAAATTCCATTAATCTTCTCAAAGTACCAAACACTTTCAGATCACTCTCTTATCACACTTGGTGACTTATTTCACTACATGTTAGAGCTCAAATCGCGGCTTCCACGTGAAATATGCATTGGTTCCTACAACACAAGTGCCTTAGTCGAAACAAATTGTCGTTGGTCCCCTAAAAGGATTGAAATGGCAACGAGGGTCATTGTTGAGGCCTTAAAAAGAACGGAATTTAGGTGGATTTCAAGACAAGAAGTTAGGGATGCCGCACGCGCTTACATTGGTGACACTggtttgttggattttgtattGAAGTCGCTAGGAAACCACATTGTTGGAAACTACTTGGTTCACATGATTTGTTTGTATAAATACATACTAATTGACACAAAACCAATTATAGGGTCAGAATTTCTTTCAGCTATACCACTGGCAGCTAGAATAATTCTTGACACTAAATATCTTATCAAAGACTGTGGAGAGGTTCCTTTGCAAGTTGAATTAGGATCAGAAGGAAAATTCAATCTTTATTGTACAATTTTGTTGAGGAATGTTAACAATGTAGGACATGATCATGAGCATTATTTGAACAAGGATATGccaattccaattccaattccaatGCCACCTTATGAATGTATCACATTGAAAAGTTGTGCTACAATTAATGACTTAAAGCTAGAAGT 1463 0.3479 MLNVDVIGNKKRKRCGRVFRFKNFGEQGYPVMFNGTSFRENVNALLEYANLESNLNMGMAMWSFQLELHHHPPLHILLFVIEESIEAALNRHCNHCQYVGWGNHFICNKKYHFLLPSKEALNSCTSCESCCDSIGTMKLIELEGHMMHGVFHSNGFGHLLCVNGLETGSNLGGNQIMEFWNRLCNGLQARKVSLNDTSQKRGMELRLVNGIAYSEPWFGRWGYKFGRGCFGVTQSMYQKAIEAIRSMPLYLLTHHIANFNHEIPLIFSKYQTLSDHSLITLGDLFHYMLELKSRLPREICIGSYNTSALVETNCRWSPKRIEMATRVIVEALKRTEFRWISRQEVRDAARAYIGDTGLLDFVLKSLGNHIVGNYLVHMICLYKYILIDTKPIIGSEFLSAIPLAARIILDTKYLIKDCGEVPLQVELGSEGKFNLYCTILLRNVNNVGHDHEHYLNKDMPIPIPIPMPPYECITLKSCATINDLKLE 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g01864 487 PANTHER PHD FINGER PROTEIN MALE MEIOCYTE DEATH 1-RELATED 378 486 - -
Tsu05g01864 487 PANTHER PHD FINGER PROTEIN MALE MEIOCYTE DEATH 1-RELATED 8 377 - -
Tsu05g01864 487 PANTHER PHD FINGER PROTEIN MALE STERILITY 1 8 377 - -
Tsu05g01864 487 PANTHER PHD FINGER PROTEIN MALE STERILITY 1 378 486 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g01864 Tsu-Chr5 20347090 20350831 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g01864 10 484 PHD Transcription Factor Family AT5G22260 46.984 1.41e-163 476
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g01864 - - mtr:MTR_5g040700 901.353