Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g01863 ATGAGCGATCACTTGGTACTCATCGTTGACCAACTCGTCCGTCCAGTTCCTGTTGTCGAACCTGTTCACCTTCCTTCCGAATCATCGCCATCTCCACCTACCGTCGATGAAGCTTCTGGATCATCCGGATCTGCTTCATCGGTGGAGGATCGGGATGGTGATGATGAGGAGGAGCCGCTGATCCAGATGGTTGAGTGCCGTATCTGTCAGGAAGAAGACAGCGTTTCCAATTTGGAGACTCCTTGCGCCTGTAGCGGTAGTCTTAAGTATGCTCACAGGAAGTGTGTCCAGCATTGGTGCAATGAGAAAGGAGACATTACTTGTGAGATATGTCATCAGCCTTATCAACCTGGGTATACTGCCCCACCACCTCGTCCTAACCCTGAAGAAACCACTATTGAAATAGGAGGAGGCTGGACATTATCTGGCTCACCCTTGGACTTGCGTGATCCTCGACTATTGGCAATTGCAGAGGCAGAACGTCAATTCCTGGATGCCGAATATGATGAGTATGCTGCTTCTAATGCTAGCGGAGCTGCATTTTGCCGCTCAGCTGCTCTAATTTTGATGGCCCTTTTACTTCTGCGGCATGCACTCTCTGTAACAGATGGTGATTCTTCTGATGATGATCCATCCAATTTTTTCTCTCTTTTCTTGCTTCGAGCTGCTGGATTTCTTTTACCTTGCTATATTATGGCTTGGGCAATCAGTATTCTGCAACGCCGACGACAAAGACAAGAGGCAGCAGCACTAGCAGCAACCCAAGTTGCTTTTGTTCTAAATTCTGGGCAGCGTAGAGGCCTACACTTTGCGATAGCACCAGCACCGACACCAGCACCAGGGCCTACAGTACAGCAAGAACAAGTGTAG 870 0.4897 MSDHLVLIVDQLVRPVPVVEPVHLPSESSPSPPTVDEASGSSGSASSVEDRDGDDEEEPLIQMVECRICQEEDSVSNLETPCACSGSLKYAHRKCVQHWCNEKGDITCEICHQPYQPGYTAPPPRPNPEETTIEIGGGWTLSGSPLDLRDPRLLAIAEAERQFLDAEYDEYAASNASGAAFCRSAALILMALLLLRHALSVTDGDSSDDDPSNFFSLFLLRAAGFLLPCYIMAWAISILQRRRQRQEAAALAATQVAFVLNSGQRRGLHFAIAPAPTPAPGPTVQQEQV 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g01863 289 MobiDBLite consensus disorder prediction 29 47 - -
Tsu05g01863 289 CDD RING_CH-C4HC3_MARCH 66 112 - -
Tsu05g01863 289 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 49 121 IPR013083 -
Tsu05g01863 289 Coils Coil 154 174 - -
Tsu05g01863 289 MobiDBLite consensus disorder prediction 22 56 - -
Tsu05g01863 289 Pfam RING-variant domain 66 111 IPR011016 GO:0008270
Tsu05g01863 289 ProSiteProfiles Zinc finger RING-CH-type profile. 58 118 IPR011016 GO:0008270
Tsu05g01863 289 PANTHER RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING 1 273 IPR033275 -
Tsu05g01863 289 SMART ringv_2 65 112 IPR011016 GO:0008270
Tsu05g01863 289 Pfam Protein of unknown function (DUF3675) 117 236 IPR022143 -
Tsu05g01863 289 PANTHER E3 UBIQUITIN-PROTEIN LIGASE MARCH-RELATED 1 273 - -
Tsu05g01863 289 SUPERFAMILY RING/U-box 64 116 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g01863 Tsu-Chr5 20327086 20331091 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g01863 65 141 C3H Transcription Factor Family AT2G37950 35.955 1.52e-07 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g01863 - - gmx:100779674 433.335
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g01863 05 20327086 20331091 Tsu05g01863 05 20327086 20331091 ECH