Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g01858 ATGGTGCAGCGTCTCACCTATCGCAGGCGTCATAGCTACGCAACCAAATCCAATCAACACAGGGTTGTTAAAACCCCTGGTGGTAAGCTTGTTTATCAGACTACTAAGAAGAGAGCTAGTGGACCTAAGTGCCCTGTTACTGGCAAGAGAATTCAAGGAATTCCACACTTGAGGCCTACAGAGTACAAGAGATCAAGGTTGCCTAGAAACCGTAGGACTGTTAACCGTGCATATGGCGGAGTTTTGTCTGGAGGTGCTGTAAGGGAAAGGATCATTAGGGCTTTCTTGGTTGAAGAGCAAAAGATAGTGAAGAAGGTCCTCAAAATTCAGAAGGCAAAGGAAAAACAGGCCACAAAGGCATGA 363 0.4601 MVQRLTYRRRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPTEYKRSRLPRNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAKEKQATKA 120
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g01858 120 PRINTS Ribosomal protein L34 signature 13 26 IPR008195 GO:0003735|GO:0005840|GO:0006412
Tsu05g01858 120 PRINTS Ribosomal protein L34 signature 26 43 IPR008195 GO:0003735|GO:0005840|GO:0006412
Tsu05g01858 120 PRINTS Ribosomal protein L34 signature 44 54 IPR008195 GO:0003735|GO:0005840|GO:0006412
Tsu05g01858 120 PRINTS Ribosomal protein L34 signature 66 88 IPR008195 GO:0003735|GO:0005840|GO:0006412
Tsu05g01858 120 PANTHER 60S RIBOSOMAL PROTEIN L34 1 120 IPR008195 GO:0003735|GO:0005840|GO:0006412
Tsu05g01858 120 ProSitePatterns Ribosomal protein L34e signature. 15 28 IPR018065 -
Tsu05g01858 120 Gene3D - 1 37 - -
Tsu05g01858 120 Gene3D - 39 120 - -
Tsu05g01858 120 Pfam Ribosomal protein L34e 1 96 IPR008195 GO:0003735|GO:0005840|GO:0006412
Tsu05g01858 120 PANTHER - 1 120 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g01858 Tsu-Chr5 20232667 20234570 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g01858 1 119 Cytoplasmic Ribosomal Protein Gene Family AT1G69620 92.437 4.36e-76 219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g01858 K02915 - gmx:100305798 214.542
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g01858 05 20232667 20234570 Tsu05g01858 05 20232667 20234570 ECH