Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g01856 ATGTCTACAATGGAAGAGTTAAAATCCCGGGATTCATCTTCCTTCACCTATGAATGGGTTTATGATGTTTTCCTCAGTTTTCGAGGAAAGGACACTCGCAAGGGTTTTACCGGAAACCTTTATAATGCTCTTTGTGGAAAAGGAATCAACGCTTTCATAGATGATCAAGACCTTAGGAAAGGGCAAGAAATCACACCAGCTCTTATTATGGCAATCCAACAATCCAGGATTGcaattgtgattttttcaaaaaactatGCATCATCCACTTTTTGTTTGGAAGAGCTTACAAAGATTATGGAGTGCATAAAACACAACGGCAGGTTGGTTTGGCCAGTTTTTTATAAAGTTGACCCTTCTGATGTGCGCCATCAGAAAGGGAGCTATGCAAAAGCACTGGCCAatcatgaaagaaagaaatccATTGACAAGGCAAAGGTCAAACAGTGGAGGTTAGCTTTGCACAAAGCAGGTAACTTGGCAGGTTGGCCTTTCAAAGATGGGTACGAATATAAGTTCATTGAGAAGATCATTCAAGAGGTCTCTGAAAAGATTGATCGTAGACCTTTACATGTTGCTAAATACCCTGTTGGGATAGAATCCCGAGTGCAAAAAGTGAACTCACTTCTAGAATTTGAATCAAATAAGGGGGCTCAAATGGTAGGGATTTACGGAATGGGTGGGTTAGGTAAAACAACACTTGCATGTGCTGTATACAATTGCATTGCTGATCAATTTGATAGTCTCTGTTTTCTTGGTGATGTTAGAGAAAATTCAATGAAGCGTGGGTTGGTACAACTACAGGAGATGCTTCTTCTTGAATTAGCTGGAGAGAAAGATCTTAAGTTGTGCAGTTTAAATAAAGGAATTTCTATTATCAAAAGTAGGCTTCGTGGGAAAAAAATTCTACTGATTTTGGATGATGTTGACAGTACGGAGCAACTAAAAGCACTTGCCGGTGGACTTGATTGGTTTGGTTCTGGCAGCAGAGTTATTGTCACAACAAGGGATAGGCATTTGCTGCATGTTTATGGTATTGAAAGAGTCTATGAAGTAGAAGAATTGAAGCGTGAAGAAGCCCTTGAATTGTTTGCTTGGAATGCTTTCAAGATAAAGGAAATTGATCCTAGCTATGTGGACATTTCAAATAGAGTAGTGCTTTATTCTAATGGCCTTCCATTGGCTGTTGAAATAATAGGTTCTGATTTGTGTGCTAAAACAAAATTGGAGTGGAAATCTGCTTTAGATACTTATGAAAAAATTCCTCATCAAAATATTCAAGAAATCCTAAGATGGTGTGGCTTCGCCCCAGACTATGCTATCCAGGTGTTGATTGATAAGAGTTTGATAAAAGTTGGTGATTATCGTGTCAGGATGCATGACATGATTGAAGATATGGGTAGAGAAATTGTGCGGCTGGAAGCACCCTCAAAGCCAGGTGAACGCAGTAGATTATGGTTCTCCAAAGATATTCTTCATGTTTTCAAAGAGAACAAGGGATCTAATAAAACTGAGATCCTCATGCTACACCTACTCAAAGATAAAGAAGTCCAATGGGATGGAAATGCATTGAAGAACATGGAAAACCTCAAAATACTGGTAATAGAAAAAGCTGACTTTTCCAGAGGACCTAATCATCTCCCAAAAAGTTTAAGAGTTCTAAAATGGAGTAATTTCCCTGAATCGTCATTGCCAGCTCATTATAATCCAAAGAAACTTGTCATACTTGACTTGTCTATGGGCTTTCTTACATTCGGCAATCAAATTATCATggtattgatattttatttgttttctgaGTTTTAA 1806 0.3726 MSTMEELKSRDSSSFTYEWVYDVFLSFRGKDTRKGFTGNLYNALCGKGINAFIDDQDLRKGQEITPALIMAIQQSRIAIVIFSKNYASSTFCLEELTKIMECIKHNGRLVWPVFYKVDPSDVRHQKGSYAKALANHERKKSIDKAKVKQWRLALHKAGNLAGWPFKDGYEYKFIEKIIQEVSEKIDRRPLHVAKYPVGIESRVQKVNSLLEFESNKGAQMVGIYGMGGLGKTTLACAVYNCIADQFDSLCFLGDVRENSMKRGLVQLQEMLLLELAGEKDLKLCSLNKGISIIKSRLRGKKILLILDDVDSTEQLKALAGGLDWFGSGSRVIVTTRDRHLLHVYGIERVYEVEELKREEALELFAWNAFKIKEIDPSYVDISNRVVLYSNGLPLAVEIIGSDLCAKTKLEWKSALDTYEKIPHQNIQEILRWCGFAPDYAIQVLIDKSLIKVGDYRVRMHDMIEDMGREIVRLEAPSKPGERSRLWFSKDILHVFKENKGSNKTEILMLHLLKDKEVQWDGNALKNMENLKILVIEKADFSRGPNHLPKSLRVLKWSNFPESSLPAHYNPKKLVILDLSMGFLTFGNQIIMVLIFYLFSEF 601
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g01856 601 Pfam NB-ARC domain 201 420 IPR002182 GO:0043531
Tsu05g01856 601 SUPERFAMILY "Winged helix" DNA-binding domain 421 495 IPR036390 -
Tsu05g01856 601 ProSiteProfiles TIR domain profile. 19 185 IPR000157 GO:0007165
Tsu05g01856 601 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 23 431 IPR044974 GO:0006952
Tsu05g01856 601 PRINTS Disease resistance protein signature 525 541 - -
Tsu05g01856 601 PRINTS Disease resistance protein signature 389 403 - -
Tsu05g01856 601 PRINTS Disease resistance protein signature 220 235 - -
Tsu05g01856 601 PRINTS Disease resistance protein signature 296 310 - -
Tsu05g01856 601 SMART till_3 20 160 IPR000157 GO:0007165
Tsu05g01856 601 Gene3D - 15 182 IPR035897 -
Tsu05g01856 601 Gene3D - 354 433 IPR042197 -
Tsu05g01856 601 PANTHER DISEASE RESISTANCE PROTEIN (TIR-NBS-LRR CLASS) 439 584 - -
Tsu05g01856 601 PANTHER DISEASE RESISTANCE PROTEIN (TIR-NBS-LRR CLASS) 23 431 - -
Tsu05g01856 601 SUPERFAMILY Toll/Interleukin receptor TIR domain 12 163 IPR035897 -
Tsu05g01856 601 Pfam TIR domain 21 184 IPR000157 GO:0007165
Tsu05g01856 601 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 439 584 IPR044974 GO:0006952
Tsu05g01856 601 Gene3D - 183 347 IPR027417 -
Tsu05g01856 601 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 185 432 IPR027417 -
Tsu05g01856 601 CDD AAA 197 337 - -
Tsu05g01856 601 SUPERFAMILY L domain-like 502 584 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g01856 Tsu-Chr5 20222209 20224733 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g01856 15 578 WRKY Transcription Factor Family AT4G12020 28.243 1.60e-62 222
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g01856 - - mtr:MTR_5g040490 929.087