Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g01855 ATGAAAGAGTTAAAAACCCAGTCCTCCTCTTCCTTTACCTATGAATGGGTTTATGATGTTTTCCTCAGTTTTCGAGGAGAGGACACTCGAAAAGGCTTTACCGGAAACCTTTATAATGCTCTTTGTAAAAAAGGAATCAACACTTTCATCGATGATCAAGAGCTAAGAAAAGGAGAAGAAATCAAACTATCTCTCATGACAGCAATCCAACAATCAAGGATGGCAATTGTGATTTTTTCAGAAAACTATGCATCGTCCACTTATTGCTTGGAAGAACTTACAAACATCATGGAGTGCATAAAAAGCAACGGCAGGTTGGTTTGGCCGGTTTTTTATCAAGTTGACCCTTCTAATGTCCGCCATCAGAAAAGGAGCTATGCCAAAGCACTGGCCAATTATGAAAGACAAAAAACCATTGACAAGGAGAAGGTCAAACAATGGAGGTCAGCTTTGGAAGAAGCAGCGAACCTATCAGGTTGGCATTTCAAACACGGGTACGAGTATGAGTTGATTGGAGAGATCGTTAAAGAAGTCTCTAAAAAGATTAATCGTAGACCTTTACATGTTGCTAAATACACTGTTGGGTTAGAGCATCGAGTGCAAAAATTGAACTTGCTTCTAGAAGTTGAATCAAATAAGGTGGTTCAAATGGTAGGAATTTTTGGAATGGGTGGGTTAGGCAAAACAACCCTTGCATGTGCCGTATACAATTGCATTGCTGATCGATTTGATAGTCTCTGTTTTCTTGCTAATGTTAGAGAAAATTCAAAGAAGTATGGGTTGGTACAAGTACAAGAGATGCTTCTTTCGGAATTAGCTGGGGAGAAAGATCTTAATTTGTGCAGTTTAAATAAAGgaatttctattataaaaagTAGACTTTGTGGGAAAAAAATTCTATTGATTCTGGATGATGTTGACAGATTGGAGCAACTAGAAGCACTTGCTGGTGGACTTGACTGGTTTGGTTCAGGCAGCAGAGTTATTATCACAACAAGGAATAAGCATTTGCTGCATGTTCAAGGCATTGAAAGAGTCTATGAATTAGAAGGATTGAAGGATGGAGAAGCCCTTGAATTGTTTGCTTGGAATGctttcaaaacaaaagaaattgatcCTAGTTATGTCGACATTTCAAAGAGAGCAGTGCGTTATTCTAATGGACTTCCATTGTCTGTTGAAATAATAGGCTCTGACTTGTATGGTAAAACAAAATCGGAGTGGAAATCTGCTTTAGATACTTATGAAAATATTCCTCATCAAACAATTCAGGAAATCCTAACAGTAAGCTATGATGGCTTAACAGAACGTGAGAAGGAAATCTTTTTAGACATCACTTGCTTTTTCAAAGGATACAAACTAAGTGATGTCGTGGACATACTAACCAGTGGTCGTGGCTTCGACCCAGACTATGCTATCCAGGTGTTGATTGATAAAAGCCTGATAAAAATTGATCATTGCCACGTGAAGATACATGACATGATTGAAGATATGGGAAGAGAAATTGTGCGGCTAGAATCAGCCTCAAAGCCAGGTGAACGCAGTAGATTATGGTTATCCACAGATATTCTTCAGGTTTTCAAAGAGAACAAGGGATCTGATAAAACTGAGGTCATCATGCTACGCCTACTCAAAGATAAAGAAGTCCAATGGGATGGAAATGCATTGAAGAAAATGGAAAACCTCAAAATACTGGTAATAGAAAAAGCTCACTTTTCCAGAGGACCTAATCATCTCCCAAAAAGTTTAAAAGTGCTAAAATGGGGTGATTATCCTGAATCGTCATTGCCAGCTCGTTATGATCCAAAGAAACTTGTCATAATCGACTTGTCTATGGCCCTTTTTACATTCGGCAAACAAAAACTCATgaattttaaATCTTTGACGGAAATGAAGTTAAGCAGTTGCCAATCCTTAAAGCAAGTACCTAACATGTCTGGAGCTCCAAATTTGAAGAAACTGCATCTTGATTCCTGCAAGAGATTACTTAAAGTTCATGATTCTGTTGGGTTCCTTAgaaaacttgaagatttgaatcTTAATCGTTGCACCAGTCTCAAGATTCTTCCTCATGGCATCAACTTACCTTCTCTTAAAACCATGTCTCTTAGGAATTGTACAACTCTCAAGAAATTTCCAGAAGTATTAGGTAAGATGGAAAACATAACATACCTTGTATTGAGTGATAGTGGGATATGTGAATTGCCCTTATCCATTGGACTTCTTGTGGGGCTTGCAAACCTGGCTATAGACAGATGCAACAAGCTACTTGAACTACCGAGTAGTATTTTTATGTTGCCAAAACTTGAGACCTTGGAGGCTTACAGTTGCAAGGGGCTTGCGCGAATCAAGAAGGGAAAAAGTCAATTACAGGAAACATCTTCAGATGTGAGAAGTGTTGTTGACTTCAGCTTTTGCCATCTATCAGATGAATTTCTCGTGGCACTTCTTCCTTGCTTTCACTGTGTCACAAATTTATCCCTTGATTACAGCAGTATCACAATCCTTCCATCGTGCATCAATGCATGCCACTCTTTGGAGGAACTTACTCTGAATAATTGTACAGAGCTTCGAGAAATCAGAGAGCTGCCGCCAAACATGAAACATCTTAGTGCAATAAATTGTACATCATTGACTTCCCAATCCAAGAAAATGTTACTGAATAAGATACTTCACAATTCTAGGGCAAAATATATCTGTTTTCCAGGATCAACTATCCCAAGCTGGTTCCATCAAAATAGACAGGCACCGTCTATGTCCTTCACGTTCCGAAACAAATTGCCACTGATGGCTCTTAGTGTTGCGGTAGTTGCCGGTGGTTGTTATTGTTCAAAATGTTGTCTGAAGTGTGACTTTGACCTTATCATTAATGGCAGTAAACGGCTCACAAACTTTCTCCATGTTAGTTGGTCTAAAACTAATGCAATTGATacaaatttaaatcatataattttgCTGGATCTGCATCTCAATGCTAGTCTTGATATGATTGGAAAACTACATATTAAGAATGGATGGAACCATGCTGAGATTTCATTAGAAAAAAACAGTGGACAAGATATAAAATGGATGAGACTTCATGTACGGGAACAAAAAACAAGCATGGAAGATATTCAAATTATCAATCCTAAGATAATTCCTAATTCCTACCGCATTCTCCACTTAAAGGGGGAAGATAAAAAGAAAGCTATTGGAGGGGTGTTTGAAGAAGGGGTCAAGAAAGGTCTTGACGAGAAGTTTTGA 3243 0.3762 MKELKTQSSSSFTYEWVYDVFLSFRGEDTRKGFTGNLYNALCKKGINTFIDDQELRKGEEIKLSLMTAIQQSRMAIVIFSENYASSTYCLEELTNIMECIKSNGRLVWPVFYQVDPSNVRHQKRSYAKALANYERQKTIDKEKVKQWRSALEEAANLSGWHFKHGYEYELIGEIVKEVSKKINRRPLHVAKYTVGLEHRVQKLNLLLEVESNKVVQMVGIFGMGGLGKTTLACAVYNCIADRFDSLCFLANVRENSKKYGLVQVQEMLLSELAGEKDLNLCSLNKGISIIKSRLCGKKILLILDDVDRLEQLEALAGGLDWFGSGSRVIITTRNKHLLHVQGIERVYELEGLKDGEALELFAWNAFKTKEIDPSYVDISKRAVRYSNGLPLSVEIIGSDLYGKTKSEWKSALDTYENIPHQTIQEILTVSYDGLTEREKEIFLDITCFFKGYKLSDVVDILTSGRGFDPDYAIQVLIDKSLIKIDHCHVKIHDMIEDMGREIVRLESASKPGERSRLWLSTDILQVFKENKGSDKTEVIMLRLLKDKEVQWDGNALKKMENLKILVIEKAHFSRGPNHLPKSLKVLKWGDYPESSLPARYDPKKLVIIDLSMALFTFGKQKLMNFKSLTEMKLSSCQSLKQVPNMSGAPNLKKLHLDSCKRLLKVHDSVGFLRKLEDLNLNRCTSLKILPHGINLPSLKTMSLRNCTTLKKFPEVLGKMENITYLVLSDSGICELPLSIGLLVGLANLAIDRCNKLLELPSSIFMLPKLETLEAYSCKGLARIKKGKSQLQETSSDVRSVVDFSFCHLSDEFLVALLPCFHCVTNLSLDYSSITILPSCINACHSLEELTLNNCTELREIRELPPNMKHLSAINCTSLTSQSKKMLLNKILHNSRAKYICFPGSTIPSWFHQNRQAPSMSFTFRNKLPLMALSVAVVAGGCYCSKCCLKCDFDLIINGSKRLTNFLHVSWSKTNAIDTNLNHIILLDLHLNASLDMIGKLHIKNGWNHAEISLEKNSGQDIKWMRLHVREQKTSMEDIQIINPKIIPNSYRILHLKGEDKKKAIGGVFEEGVKKGLDEKF 1080
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g01855 1080 SUPERFAMILY Toll/Interleukin receptor TIR domain 8 160 IPR035897 -
Tsu05g01855 1080 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 182 445 IPR027417 -
Tsu05g01855 1080 Gene3D - 12 179 IPR035897 -
Tsu05g01855 1080 Gene3D Ribonuclease Inhibitor 694 899 IPR032675 -
Tsu05g01855 1080 PRINTS Disease resistance protein signature 217 232 - -
Tsu05g01855 1080 PRINTS Disease resistance protein signature 293 307 - -
Tsu05g01855 1080 PRINTS Disease resistance protein signature 386 400 - -
Tsu05g01855 1080 PRINTS Disease resistance protein signature 693 709 - -
Tsu05g01855 1080 PANTHER ARCHAEAL ATPASE 28 1013 - -
Tsu05g01855 1080 SUPERFAMILY L domain-like 536 887 - -
Tsu05g01855 1080 Gene3D Ribonuclease Inhibitor 514 693 IPR032675 -
Tsu05g01855 1080 SMART till_3 17 157 IPR000157 GO:0007165
Tsu05g01855 1080 Pfam TIR domain 18 183 IPR000157 GO:0007165
Tsu05g01855 1080 CDD AAA 220 334 - -
Tsu05g01855 1080 Pfam NB-ARC domain 206 432 IPR002182 GO:0043531
Tsu05g01855 1080 Gene3D - 351 435 IPR042197 -
Tsu05g01855 1080 ProSiteProfiles TIR domain profile. 16 182 IPR000157 GO:0007165
Tsu05g01855 1080 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 28 1013 IPR044974 GO:0006952
Tsu05g01855 1080 SUPERFAMILY "Winged helix" DNA-binding domain 422 527 IPR036390 -
Tsu05g01855 1080 Gene3D - 180 344 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g01855 Tsu-Chr5 20216095 20220894 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g01855 2 849 WRKY Transcription Factor Family AT4G12020 30.390 1.50e-92 323
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g01855 - - mtr:MTR_5g040490 1526.15