Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g01852 ATGGCTACAATGAAAGAGTTAAAACCCCAGTTCTCCTCTTCCTTTACCTGTGAATGGGTTTACGATGTTTTCCTCAGTTTTCGAGGAGAGACTCGAAACGGTTTTACCGGAAAACTTTATAATGCTCTTTGTGTAAAAGGAATCAACACTTTCATAGATGATCAAGATCtaagagaaggagaagaaatcAAACTAGCTCTCATGACAGCAATCCAACAATCAAGGATGGCAATTGTGATTTTTTCAGAAAACTATGCATCATCCACTTTTTGCTTGGAAGAACTTACAAAGATCATGGAGTGCATAAAACAAAATGGCAGGTTGGTTTGGCCAATTTTTTATCTAGTTGACCCTTCTGATGTGCGCCATCAGAAAGGGAGCTACGCAGAAGCACTGGCCAAtcatgaaaaagagaaaaccATAAACAAGGCAACAGTCAAACGGTGGAGGTTAGCTTTGCAAGAAACAGCAAATCTGGTAGGTTCGCATTTCAAACACAGGTACGACTGCGAGTATGAGTTCATTGGGAAGATCATTCAAAAGATCTCagaaaatattaatcgtcaacaTTTACATGTTGCTAAATACCCTGTCGGGTTAGAATCGCGAGTGCAAAAAGTGAAGTCACTTCTAGAAGTTGAATCAAATGAGGTGGTTCAAATGGTAGGGATTTATGGCATGGGTGGGTTAGGCAAAACAACAGTTGCATGTGCTGTATACAATTGCATTGCTGATCAATTTGATTGTCTCTGTTTTCTTGCTAATGTAagagaaaattcaaaaaagCACGGGTTAATACAACTTCAGGAGATGCTTCTTCGTGAATTAGTTGGGGAGAAATATCTTAAGTTGTGCAGTTTAAATAAAGgaatttctattataaaaagtaaactttgTAGGAAAAAAATTCTATTGATTCTAGATGATGTTGACAGTTTGGAGCAACTGGAAGCACTCGCTGGTGGACTTGACTGGTTTGGTTCAGGCAGCAGAGTTATTATCACAACAAGGGATAAGCATTTGTTGCATGTTCATGGCATTGAAAGAGTCTATGAAGTAGATGAATTGAAGACTGGAGAAGCCCTCGAATTGTTTGCTTGGAATGctttcaaaacaaaagaaattgatcCTAGTTATGTCGACATTTCAAAGAGAGCAGTGCTTTATTCAAATGGCCTTCCATTATCTGTTGAAATAATAGGTTCTGATTTGTGTGGTAAAACAAAATTGGAGTGGAAATCTGCTTTAGATGCTTATGAAAAAATTCCTCATGAAAAAATTCAGGAAATCTTAAGAGTAAGCTATGATGGCTTAACAGAACGTGAGAAGGAAATTTTTTTAGATATCACTTGCTTCTTCAAAGGATACAAACTAAGTGATGTCATGAACATACTAGGCAGTGGTCGTGGCTTCGCCCCAGACTATGCTATCCGGGTGTTGATTGATAAGAGTCTGATTAAAGTTGGTGGTTATCGTGTCAGGATGCATGACATGATTGAAGATATGGGTAGAGAAATTGTGCGGCTGGAAGCACCCTCAAAGCCAGGTGAACGAAGTAGATTATGGTTCTCCAAAGATATTCTTCATGTTTTCAAAGAGAATAAGGGATCTGATAAAACTGAGGTCATCATGCTACGTCTACTCAAAGATAAGGAAGTCCAATGGGATGGAAATGCATTGAAGAATATGGAAAACCTCAAAATACTAGGAATAGAAAAAGCTCACTTTTCCAGAGGACCTAATCATCTCCCAAAAAGTTTAAAAGTGTTAAAATGGTGTGATTATCCTGAATCGTCATTGCCGGCTCATTATGATCCAAAAACACTTGTCATACTTGACATGTCTATGGGCCTTTTTACATTCGGCAATCAAAAAATCATgAAATTTAAATCTTTGACGGAAATGAAGTTAAGCAGTTGTCAATCCTTAAAGCAAGTACCTGACATGTCTGGAGCTCCAAATTTGAAGAAACTGCATCTTGATTCCTGCAATAGTTTAGTTGAAGTTCATGATTCCGTTGGGTTCCttgaaaaacttgaagatttgaatcTTAATCGTTGCCCCAGTCTCAAGACTCTTCCTGATGGCATCAACTTACCTTCTCTTAAAACCATGTCCCTTAGGAATTGTACAACTCTCAAGAATTTTCCAAAAATATTAGGGAAGATGGAAAACATAACATACCTTGTTTTGAGTGATAGTGGAATAAGTGAATTGCCCTTTTCAATTGGACGTCTTGTGGGGCTTGCAAACCTGGCTATAGACAGATGCAGCAAGCTACTTGAACTACCAAGTAGTATTTTTATGTTGCCAAAACTTGAGACCTTGGAGGCTTACAGTTGCAAGGGGCTTGCGCGAATCAAGAAGGGAAAAAGTCAATTGCAGGAAACAACATCTTCAGCAGTATCACAATCCTTCCATCATGCATCAAAGCGTGCCACTCTTTGA 2448 0.3668 MATMKELKPQFSSSFTCEWVYDVFLSFRGETRNGFTGKLYNALCVKGINTFIDDQDLREGEEIKLALMTAIQQSRMAIVIFSENYASSTFCLEELTKIMECIKQNGRLVWPIFYLVDPSDVRHQKGSYAEALANHEKEKTINKATVKRWRLALQETANLVGSHFKHRYDCEYEFIGKIIQKISENINRQHLHVAKYPVGLESRVQKVKSLLEVESNEVVQMVGIYGMGGLGKTTVACAVYNCIADQFDCLCFLANVRENSKKHGLIQLQEMLLRELVGEKYLKLCSLNKGISIIKSKLCRKKILLILDDVDSLEQLEALAGGLDWFGSGSRVIITTRDKHLLHVHGIERVYEVDELKTGEALELFAWNAFKTKEIDPSYVDISKRAVLYSNGLPLSVEIIGSDLCGKTKLEWKSALDAYEKIPHEKIQEILRVSYDGLTEREKEIFLDITCFFKGYKLSDVMNILGSGRGFAPDYAIRVLIDKSLIKVGGYRVRMHDMIEDMGREIVRLEAPSKPGERSRLWFSKDILHVFKENKGSDKTEVIMLRLLKDKEVQWDGNALKNMENLKILGIEKAHFSRGPNHLPKSLKVLKWCDYPESSLPAHYDPKTLVILDMSMGLFTFGNQKIMKFKSLTEMKLSSCQSLKQVPDMSGAPNLKKLHLDSCNSLVEVHDSVGFLEKLEDLNLNRCPSLKTLPDGINLPSLKTMSLRNCTTLKNFPKILGKMENITYLVLSDSGISELPFSIGRLVGLANLAIDRCSKLLELPSSIFMLPKLETLEAYSCKGLARIKKGKSQLQETTSSAVSQSFHHASKRATL 815
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g01852 815 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 190 449 IPR027417 -
Tsu05g01852 815 SUPERFAMILY Toll/Interleukin receptor TIR domain 11 161 IPR035897 -
Tsu05g01852 815 Gene3D Ribonuclease Inhibitor 699 814 IPR032675 -
Tsu05g01852 815 Gene3D Ribonuclease Inhibitor 555 698 IPR032675 -
Tsu05g01852 815 SMART till_3 20 159 IPR000157 GO:0007165
Tsu05g01852 815 ProSiteProfiles TIR domain profile. 19 186 IPR000157 GO:0007165
Tsu05g01852 815 Gene3D - 15 183 IPR035897 -
Tsu05g01852 815 Gene3D - 355 439 IPR042197 -
Tsu05g01852 815 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 31 772 IPR044974 GO:0006952
Tsu05g01852 815 Pfam NB-ARC domain 201 436 IPR002182 GO:0043531
Tsu05g01852 815 PRINTS Disease resistance protein signature 390 404 - -
Tsu05g01852 815 PRINTS Disease resistance protein signature 221 236 - -
Tsu05g01852 815 PRINTS Disease resistance protein signature 297 311 - -
Tsu05g01852 815 PRINTS Disease resistance protein signature 697 713 - -
Tsu05g01852 815 Gene3D - 184 348 IPR027417 -
Tsu05g01852 815 SUPERFAMILY "Winged helix" DNA-binding domain 426 531 IPR036390 -
Tsu05g01852 815 SUPERFAMILY L domain-like 540 789 - -
Tsu05g01852 815 Pfam TIR domain 21 187 IPR000157 GO:0007165
Tsu05g01852 815 PANTHER ARCHAEAL ATPASE 31 772 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g01852 Tsu-Chr5 20170937 20174182 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g01852 9 795 WRKY Transcription Factor Family AT4G12020 30.590 3.11e-91 313
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g01852 - - mtr:MTR_5g040490 1264.98