Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g01850 ATGGAAGAGAGAAATGATGGTGAAAAACTTGATGAAGTTATTTTACCAGGGTTTAGGTTTCATCCAACTGATGAAGAGCTTGTTGGTTTTTACCTAAAGAGAAAGGTTCAACAAAGGCCTCTTTCTATTGAGCTCATCAAGCAGCTTGATATCTATAAATATGATCCTTGGGATCTTCCAAAGTTTGCTAGTACAGGAGAGAAAGAATGGTATTTCTACTGTCCAAGAGACAGAAAATACAGAAACAGTGCAAGGCCTAATAGGGTAACTGGAGCTGGATTTTGGAAAGCTACAGGTACTGATAGACCTATCTATTCCTCAGAAGGTTCAAAGTGCATTGGCCTTAAGAAATCATTAGTCTTTTACAAAGGTAGAGCTGCTAAAGGAATCAAAACTGATTGGATGATGCATGAGTTTAGGCTACCTTCTCTCACTGATCCACTTTCACCTAAGAAGTACTTGGAGAAAACCATTCCTGCTAATGAATCATGGGCTATCTGCAGAATATTCAAGAAAACCAATTCTACAGCTCAAAGAGCTTTGTCTCAATCTTGGGTTTCTTCCTTTTCTGAAACAAGAACCTCTAATATGCTAACCAAAAATCAAGAAATCACTCAATTTTGTTCTGACAATAACATGTCCTTGACAAAGAAAACTACCTTAGCCAACAACTTTTGCACTAACAACAATCATAACCAAAACTTTCATGTTGATGTTAATCCATTACTCCACAAAGCCTTTGATCACTTATTACCAATATCATCAAATGAAGATTTTAATACAAGCATGATATtctcatcatcaccatcatctcaACTACAAACatctaataacaataatattatttcCAAATCTACAATAGATGTTTCATCAATGTTGTTGAACATGTCATCCTCAATGTTTGGTGATTTTAACAAGACATGTGATAATGAGGTTACAACTACAAATTTGATGAATGGTGGGTTGCAAGAGCAATTTAGTGAGTACTCATTACCATATGGTAATTAccaatatgaaaataataataataataatgcattGGTAAAGGTACCTTATAATGTGAATGTGAATTTGCCTCGTATTGATGATGAGCAAGAATTGATGCATTTCAATATTGGTGATGCATGGAAGTCAAATTTGCTTTGGGATACTTCATTTTGTCCTTGTGATGTTCCCTCTAGTTATTATTCAACAACAACTAAGTGTTACACTTAA 1215 0.3317 MEERNDGEKLDEVILPGFRFHPTDEELVGFYLKRKVQQRPLSIELIKQLDIYKYDPWDLPKFASTGEKEWYFYCPRDRKYRNSARPNRVTGAGFWKATGTDRPIYSSEGSKCIGLKKSLVFYKGRAAKGIKTDWMMHEFRLPSLTDPLSPKKYLEKTIPANESWAICRIFKKTNSTAQRALSQSWVSSFSETRTSNMLTKNQEITQFCSDNNMSLTKKTTLANNFCTNNNHNQNFHVDVNPLLHKAFDHLLPISSNEDFNTSMIFSSSPSSQLQTSNNNNIISKSTIDVSSMLLNMSSSMFGDFNKTCDNEVTTTNLMNGGLQEQFSEYSLPYGNYQYENNNNNNALVKVPYNVNVNLPRIDDEQELMHFNIGDAWKSNLLWDTSFCPCDVPSSYYSTTTKCYT 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g01850 404 PANTHER PROTEIN FEZ ISOFORM X1 1 400 - -
Tsu05g01850 404 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 1 400 - -
Tsu05g01850 404 Gene3D NAC domain 23 177 IPR036093 GO:0003677|GO:0006355
Tsu05g01850 404 SUPERFAMILY NAC domain 14 172 IPR036093 GO:0003677|GO:0006355
Tsu05g01850 404 Pfam No apical meristem (NAM) protein 16 141 IPR003441 GO:0003677|GO:0006355
Tsu05g01850 404 ProSiteProfiles NAC domain profile. 14 172 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g01850 Tsu-Chr5 20164849 20167134 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g01850 2 210 NAC Transcription Factor Family AT1G26870 72.770 2.88e-107 320
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Tsu05g01850 NAM 4.3e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g01850 - - gmx:100783995 481.87
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g01850 05 20164849 20167134 Tsu05g01850 05 20164849 20167134 ECH