Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g01823 ATGGAATATTCTTCTGAGGCCAAATCTGCTGAACAACTCGTTAATTTCTTCCCAAAATCTGTTAATAAGAAGAACTTAAGAAAACGAAGTTTTGATCACAGTGAAGATAACTCCAACAATGAAGCCTCTTTCACGTATAACCCTAACTTGTTCTTTTCTACTCAATCATCGATCGAAGAATCTGAGAAACCCTATTTTCAATGTTTTGAGTCTTCTAAACAGATTCAAATTCAACATGATAACAAAGCCACTTCAACTATCGAAACTGAGACTCTTTTTCCGAAAGATGCCATCCGTGGGTCACATGGTCCTATCAGGGCAACGGTTCATATAAGAGTTTCTGAGAGATTCGATTATCAGCCTGATATATGTAAGGATTATAAGGTAACCGGTTATTGTGGCTATGGAGATTCGTGTAAATTTTTGCACGATCGAAGTGATTATAAATCGGGATGGCAGATGGAGAAGGATTGGGAAGAAGCTAAGAAAATTCCCACTAAACTTGTGATCGGTTACACAACACTTAATGGAGTTACTTCTGAACTTTACAATTGCAATACCAACAAACGTTGCACGATTCTGAACTTCACTCCCGATGTGATCTCCTTCCCTCTCTCAATTTACAGAGAACAACAACAGAAGATGGGTGATTTTGTAATGACATATGTATGCTGTAGTTATTATGGTTGGGCCGAAGGTCGTGATCTCTATTGA 714 0.381 MEYSSEAKSAEQLVNFFPKSVNKKNLRKRSFDHSEDNSNNEASFTYNPNLFFSTQSSIEESEKPYFQCFESSKQIQIQHDNKATSTIETETLFPKDAIRGSHGPIRATVHIRVSERFDYQPDICKDYKVTGYCGYGDSCKFLHDRSDYKSGWQMEKDWEEAKKIPTKLVIGYTTLNGVTSELYNCNTNKRCTILNFTPDVISFPLSIYREQQQKMGDFVMTYVCCSYYGWAEGRDLY 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g01823 237 Gene3D - 114 200 - -
Tsu05g01823 237 SMART c3hfinal6 118 145 IPR000571 GO:0046872
Tsu05g01823 237 ProSiteProfiles Zinc finger C3H1-type profile. 118 146 IPR000571 GO:0046872
Tsu05g01823 237 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 119 144 IPR000571 GO:0046872
Tsu05g01823 237 SUPERFAMILY CCCH zinc finger 116 149 IPR036855 GO:0046872
Tsu05g01823 237 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 1-LIKE 100 166 - -
Tsu05g01823 237 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 1-LIKE 4 97 - -
Tsu05g01823 237 PANTHER ZINC FINGER PROTEIN 183 100 166 IPR039971 -
Tsu05g01823 237 PANTHER ZINC FINGER PROTEIN 183 4 97 IPR039971 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g01823 Tsu-Chr5 19776641 19779212 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g01823 4 164 C2H2 Transcription Factor Family AT1G01350 42.291 2.76e-48 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Tsu05g01823 zf-CCCH 3.8e-09 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g01823 K13127 - gmx:100787434 193.741