Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g01813 ATGGAATTGGAAGGTGATCATCAAAATAATGGAATCCGAAGCAGACCCAATTTCCCTCTTCAGCTTTTAGAGAAAAAAGACAACAACATCCTAGATGTCTCCGAAGAACAACAACCTTGTTCAACCACCGCAAACGACGGCTCAGGTACCATCATCACATCGGACAACCAGAAAAAGCCAGCACCGAAGCGGGCCTCGACAAAAGACCGGCATACAAAAGTGGATGGACGAGGCCGCCGGATCCGCATGCCGGCGGCCTGTGCAGCCAGAGTGTTCCAGCTCACGCGTGAGCTGGGACATAAGTCGGATGGTGAGACGATTGAGTGGCTACTTCAACAAGCAGAGCCAGCCGTCATCGCCGCCACCGGTACAGGAACAATTCCGGCCAACTTCACTTCTCTTAACATCTCTCTTAGAAGCTCAGGTTCAACCATGTCAGCACCATCACACTATTTTAGAGGTAACTACTTCAACCCTAGCTCGTTCTCAACGGCCGCAGCCGCGGCGGCTCAGCTAAGAAACCGAGCTGAATGGGACAGAACTATGAACATGAATACGAACGTTACAGCTGAAGATTCTAGAAGGAATAACAATATGATGGAGAATCCTTCATCtttatcagcaattttaaatttcaacaacGTGCAAAATGCTATTCTACAAGCTAAACAAGAGCTCCGGGAAGAAAACGCCACAGGAGGCGGCGGCGGTGGTGGAGGATTTGAATTATTGGGTTCTGATTCTGATGGAAGCATAGGGAGGAAAAGAAGGTCAGAGCAAGaattgttatcacaaaatatGGGAAGTTATTTGTTACAATCAAATGTGGGGTCACTTCCTTCAAGTCATGCTTCCAATACGGCAGCGTTTTGGATGGTAACAGGTAATGGTAACCAAAGTGTTAATGGTGGTGGTAATGGAAATGATCCAATTTGGGCAATTCCTTCTGTTGGTAATAATGGTTTGTATAGAGGAGCTATGCCTTCTAATGGAATTCATTTCATGAATTTTGCTTCTCCAATGAATCTTATGCCTGGAAGTCAATTAAGTTCTGGAATTGTCGGCGGtggtggaggtggtggtggtatTATGGCCGAAAGTAATTTAAGTATGCTTTCGGCCATGAATGCCTACAGGCAGATTCAGACAAATGGTTTGTCCGAGTCGCCCGGGCAACATCATGGAGGAGGAGATGATGGACATGACTCAAGCAGTCAACAATCCTAA 1227 0.4442 MELEGDHQNNGIRSRPNFPLQLLEKKDNNILDVSEEQQPCSTTANDGSGTIITSDNQKKPAPKRASTKDRHTKVDGRGRRIRMPAACAARVFQLTRELGHKSDGETIEWLLQQAEPAVIAATGTGTIPANFTSLNISLRSSGSTMSAPSHYFRGNYFNPSSFSTAAAAAAQLRNRAEWDRTMNMNTNVTAEDSRRNNNMMENPSSLSAILNFNNVQNAILQAKQELREENATGGGGGGGGFELLGSDSDGSIGRKRRSEQELLSQNMGSYLLQSNVGSLPSSHASNTAAFWMVTGNGNQSVNGGGNGNDPIWAIPSVGNNGLYRGAMPSNGIHFMNFASPMNLMPGSQLSSGIVGGGGGGGGIMAESNLSMLSAMNAYRQIQTNGLSESPGQHHGGGDDGHDSSSQQS 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g01813 408 MobiDBLite consensus disorder prediction 34 60 - -
Tsu05g01813 408 Coils Coil 212 232 - -
Tsu05g01813 408 MobiDBLite consensus disorder prediction 61 79 - -
Tsu05g01813 408 ProSiteProfiles TCP domain profile. 67 121 IPR017887 -
Tsu05g01813 408 Pfam TCP family transcription factor 66 217 IPR017887 -
Tsu05g01813 408 PANTHER TCP FAMILY TRANSCRIPTION FACTOR 8 408 - -
Tsu05g01813 408 MobiDBLite consensus disorder prediction 34 79 - -
Tsu05g01813 408 MobiDBLite consensus disorder prediction 384 408 - -
Tsu05g01813 408 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 8 408 IPR005333 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g01813 Tsu-Chr5 19563102 19564791 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g01813 58 348 TCP Transcription Factor Family AT3G47620 45.482 1.69e-51 178
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Tsu05g01813 TCP 2e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g01813 - - gmx:100809966 486.878
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g01813 05 19563102 19564791 Tsu05g01813 05 19563102 19564791 ECH
Tsu05g01455 05 13843246 13850543 Tsu05g01813 05 19563102 19564791 PCT
Tsu05g01813 05 19563102 19564791 Tsu04g03687 04 45919102 45921228 PCT