Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g01811 ATGGAAACAGAATATGAAGAACAAATTTGTAGTCCAACTGATAACTCATGTGAGGGTTTGGAAACTGAAAGTGGGACAATCAATATGAAATTTGATTACAAAGGACATAGAATTCCTATAAACGGGGTAGAAGATATGGGTGGATTGAATTTTAAGAAGTTTACTCCAGCTGAATTATTGCAGTATGACTTTCCTAACCGTGAGGTGGCTTTTACATTCTATAACTGGTACGGTCGAATGCATGGATTTTCTGCCCGCAAAAACAGGATAAGAAGAAACAAAGACCAAGAGGTTGTCCAACAGGAGTTTGTGTGTTATAGGCAAGGGTTTAGAGAAGATAGATTTAAGGACAACAAAATCCGTCAGCGTGAAGCAAAGGTAGTTACAAGATGCGGTTGTGAGGCAAAGTGTACTGTGCAttttgatcacatcaatcaaCGTTGGTACGTAAGATGGATAAATGATTACCACAATCACCCTTTTGTTGAAGAAGAATTTATTGGGTTTCTACCAGGTCATAGGGGAATGGATGATGATGACATACTTCAAATGAATCACCATAAGAAGTCGGGGATTAGGACATCACAAATATTTGGATCATTTGCTAATCAAGTTGGTGGATATGAGCATGTCACTTTCTCAGTTCAAGACATGTATAATGCAGTAGACAAGGAGAGGCGTTCTAAAGGTACTGACTCAAGAGCTGCATTAGCATATTTGCGTTCTTTGAAGAGTTCTGATCCAACAATGTATTGGAAGCATACAGTTGATAAACAAGGAAGGTTGGAACATTTATTCTGGTCTGATGGTANCTTTGAAGAGTTCTGA 828 0.3768 METEYEEQICSPTDNSCEGLETESGTINMKFDYKGHRIPINGVEDMGGLNFKKFTPAELLQYDFPNREVAFTFYNWYGRMHGFSARKNRIRRNKDQEVVQQEFVCYRQGFREDRFKDNKIRQREAKVVTRCGCEAKCTVHFDHINQRWYVRWINDYHNHPFVEEEFIGFLPGHRGMDDDDILQMNHHKKSGIRTSQIFGSFANQVGGYEHVTFSVQDMYNAVDKERRSKGTDSRAALAYLRSLKSSDPTMYWKHTVDKQGRLEHLFWSDGXFEEF 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g01811 275 Pfam FAR1 DNA-binding domain 72 162 IPR004330 -
Tsu05g01811 275 PANTHER FAR-RED IMPAIRED RESPONSIVE (FAR1) FAMILY PROTEIN-RELATED 56 185 - -
Tsu05g01811 275 PANTHER FAR-RED IMPAIRED RESPONSIVE (FAR1) FAMILY PROTEIN 56 185 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g01811 Tsu-Chr5 19526356 19527278 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Tsu05g01811 FAR1 1.6e-18 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g01811 - - mtr:MTR_1g070355 234.958