Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g01791 ATGACAGGCCTAGAGAAAGCAATGCATGAGATGGCTTTCTTCCAAGCAAATTTTATGTTACAAACTCCTCATCACCATGATGATCATCACCATCATCCACCACCTTCACTCAACTCAATTCTACCTCAAGATTATCATGGGGGACCATCATTTCTAGGAAAGAGATCCATGTCATTTTCATCAGGAATTGAACTAGGAGAAGAAGCCAATATAGCTGAGGAAGATTTATCTGATGATGGATCACAAGCTGgtgagaagaagagaagacTTAACATGGAACAAGTGAAGACACTTGAGAAAAGTTTTGAGCTTGGTAATAAGCTTGAGCCTGAGAGGAAAATGCAGCTTGCAAGAGCTTTAAATTTGCAGCCAAGACAAGTTGCTATATGGTTTCAAAACAGGAGAGCAAGATGGAAGACAAAGCAGTTGGAAAAAGACTATGATGTCCTTAAAAGACAATATGATGCTGTTAAGTTAGATAATGATGCACTTCAAGCTCAGAACCAAAAACTTCAAGCAGAGATATTGGCATTGAAAAATCGAGAACCAACAGAATCAATCAACCTCAACAAAGAAACAGAAGGATCAAGCAGCAATAGAAGTGAAAATAGTTCAGATATCAAGTTAGATATCTCAAGAACACCAGCTAGTGATAGTCCTTTATCTACACATCACCATACAACAAGTAGAACTTTCTTTCCACCTTCTTCAAGGCCTTCAGGTGGAATTGCTCAACTTTTCCAAACAACTTCAAGGCCAGAAATTCAATGTCAAAAGATTGATCAATTGGTCAAAGAAGAAAGTTTAAGTAACATGTTTTGTGGTATGGATGATCAAGCTGGATTTTGGCCATGGTTGGAGCAACAACATTTCAATTGA 879 0.372 MTGLEKAMHEMAFFQANFMLQTPHHHDDHHHHPPPSLNSILPQDYHGGPSFLGKRSMSFSSGIELGEEANIAEEDLSDDGSQAGEKKRRLNMEQVKTLEKSFELGNKLEPERKMQLARALNLQPRQVAIWFQNRRARWKTKQLEKDYDVLKRQYDAVKLDNDALQAQNQKLQAEILALKNREPTESINLNKETEGSSSNRSENSSDIKLDISRTPASDSPLSTHHHTTSRTFFPPSSRPSGGIAQLFQTTSRPEIQCQKIDQLVKEESLSNMFCGMDDQAGFWPWLEQQHFN 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g01791 292 MobiDBLite consensus disorder prediction 70 92 - -
Tsu05g01791 292 Pfam Homeobox associated leucine zipper 141 181 IPR003106 GO:0006355|GO:0043565
Tsu05g01791 292 MobiDBLite consensus disorder prediction 189 244 - -
Tsu05g01791 292 ProSitePatterns 'Homeobox' domain signature. 116 139 IPR017970 GO:0000981|GO:0006355
Tsu05g01791 292 MobiDBLite consensus disorder prediction 186 244 - -
Tsu05g01791 292 Pfam Homeodomain 86 139 IPR001356 GO:0003677
Tsu05g01791 292 SMART HOX_1 84 145 IPR001356 GO:0003677
Tsu05g01791 292 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-13 9 292 - -
Tsu05g01791 292 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 9 292 IPR045224 GO:0003700
Tsu05g01791 292 Coils Coil 133 181 - -
Tsu05g01791 292 CDD homeodomain 86 142 IPR001356 GO:0003677
Tsu05g01791 292 ProSiteProfiles 'Homeobox' domain profile. 81 141 IPR001356 GO:0003677
Tsu05g01791 292 SUPERFAMILY Homeodomain-like 79 143 IPR009057 -
Tsu05g01791 292 MobiDBLite consensus disorder prediction 23 45 - -
Tsu05g01791 292 Gene3D - 78 147 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g01791 Tsu-Chr5 18989317 18991789 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g01791 11 292 Homeobox Transcription Factor Family AT1G69780 64.310 3.16e-118 339
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Tsu05g01791 Homeodomain 1.6e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g01791 K09338 - gmx:100808033 462.611
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g01791 05 18989317 18991789 Tsu05g01791 05 18989317 18991789 ECH
Tsu05g01791 05 18989317 18991789 Tsu05g01730 05 17907834 17910327 PCT