Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g01786 ATGCAAGATATGAAGAAGCAACATAATCAGAATCAGAAGCAGAAGCAGCTTCTTAATGAAGAATCTAAGAAGAAGGAGCGTCACATTGTGACGTGGACTCAAGagGAGGATGATATACTTAGAGACCAAATTGGAATCCATGGAACTGAAAATTGGGCAATAATTGCTTCTAAATTCAAGGACAAGACAACAAGACAGTGTAGAAGAAGATGGTACACTTATTTGAATTCTGATTTCAAGAAAGGTGGATGGTCCCCAGAGGAAGACATGCTCTTATGTGAGGCTCAAAAAATATTTGGCAATAGGTGGACAGAAATAGCAAAGGTGGTTTCAGGCAGAACTGATAATGCTGTGAAAAACCGTTTCTCCACATTGTGCAAAAAGAGAGCTAAATATGAAGCCTTAGCAAAAGAGAACAACGTTTCATACACgaattcaaataacaaaagGGTTATTTTCCGAGATGCAGAATCAGAATCTGCAGTAGATTTTAAGAAGATGAGGAGGTCTCATATCCCTGATGATGCTGAAAAGATCAACTTTGCAGACAGATCACATAAACAAAATGAAACTTCAAGAGTACCATTGGCAGTTTTAGCTCAAAACTCTCATAGTGTCAACAACTTGCCGGACCAGAATCATGTCTGCAATGTGAAGTTTAATACTTATGCTCAAACCAACAAGATTCAAGGAACATTCCTTAAAAAGGATGATCCAAAGATAAATGAATTGATGCAACAAGCCGAGCTACTATCATCACTAGCTCTAAAAGTTGATGCAGAGAATATGGACCAAAGTCTTGAAAATGCATGGAAGATTCTTCAAGAGTTTATGAACCGAAACAAAGAATCAGATATTCCTGGATATAAGATTCCAGATTTACAGCTTGTAGATCTTAAAGACTTATTGGAAGACTTAAAGAATAGTAGCGAGGAAATCCAACCATGTTGGAGGTATATGGAATTATATGAAGACTCTCCAAGCAGTTCTGAACACAGTACAGGATCAACTATTCTGCCTCATTCTACTGCTGAGAATTTGGAACACTCACTGCATCAAGATAATGGAACTGAACAGAAATCTATACAAATTGAAGATCAAAAGGGTGTTGGAGAATGTGATCAAGTGGTTCTTTCTACTGTTACTTTGGATCAAGAAGATATATTCTCATCTTGTGAGGAACAGATAAACAATGACGGCATTGTTGCTTCCTTATCAAGTACAGAGTTCAGTTCTCCTCTTCAAGTTACTCCTATGTTCAGATCTTTAGCTGCAGGAATTCCTAGTCCACAATTTTCAGAAAGTgaAAGGAACTTCCTTATGAAAACACTTGGAATGGATTCTCCACCCCTCAACCCAATCGCCAATCCCCCGCAACCGCCACTCTGCAAAAGAGCCCTCCTACAAAGTTAA 1413 0.3786 MQDMKKQHNQNQKQKQLLNEESKKKERHIVTWTQEEDDILRDQIGIHGTENWAIIASKFKDKTTRQCRRRWYTYLNSDFKKGGWSPEEDMLLCEAQKIFGNRWTEIAKVVSGRTDNAVKNRFSTLCKKRAKYEALAKENNVSYTNSNNKRVIFRDAESESAVDFKKMRRSHIPDDAEKINFADRSHKQNETSRVPLAVLAQNSHSVNNLPDQNHVCNVKFNTYAQTNKIQGTFLKKDDPKINELMQQAELLSSLALKVDAENMDQSLENAWKILQEFMNRNKESDIPGYKIPDLQLVDLKDLLEDLKNSSEEIQPCWRYMELYEDSPSSSEHSTGSTILPHSTAENLEHSLHQDNGTEQKSIQIEDQKGVGECDQVVLSTVTLDQEDIFSSCEEQINNDGIVASLSSTEFSSPLQVTPMFRSLAAGIPSPQFSESERNFLMKTLGMDSPPLNPIANPPQPPLCKRALLQS 470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g01786 470 ProSiteProfiles Myb-like domain profile. 32 75 IPR001005 -
Tsu05g01786 470 PANTHER TRANSCRIPTION FACTOR MYB88 12 468 - -
Tsu05g01786 470 Coils Coil 1 24 - -
Tsu05g01786 470 CDD SANT 84 125 IPR001005 -
Tsu05g01786 470 Gene3D - 19 80 - -
Tsu05g01786 470 PANTHER MYB PROTEIN-RELATED 12 468 - -
Tsu05g01786 470 SMART sant 28 77 IPR001005 -
Tsu05g01786 470 SMART sant 80 128 IPR001005 -
Tsu05g01786 470 Gene3D - 82 155 - -
Tsu05g01786 470 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 24 79 IPR017930 -
Tsu05g01786 470 SUPERFAMILY Homeodomain-like 28 122 IPR009057 -
Tsu05g01786 470 ProSiteProfiles Myb-like domain profile. 76 126 IPR001005 -
Tsu05g01786 470 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 80 130 IPR017930 -
Tsu05g01786 470 CDD SANT 31 75 IPR001005 -
Tsu05g01786 470 MobiDBLite consensus disorder prediction 1 22 - -
Tsu05g01786 470 Pfam Myb-like DNA-binding domain 32 92 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g01786 Tsu-Chr5 18832746 18838338 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g01786 1 319 MYB Transcription Factor Family AT2G02820 60.896 1.63e-134 389
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Tsu05g01786 Myb_DNA-bind_6 1.1e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g01786 K09422 - gmx:100807667 729.169
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g01786 05 18832746 18838338 Tsu05g01786 05 18832746 18838338 ECH
Tsu05g01786 05 18832746 18838338 Tsu05g01786 05 18832746 18838338 PCT