Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g01776 ATGGATTTCAAAAAGCTTCTTAGAAAACCTAAACACGAACGTCGTGATGCTCTCAAGCTCTTCAATTACGACGCTCAATCGTCTTTCTCTTCGTTCGACTCTTCTATTTCAGTCTACACTTGTTCCACGGACTTAACCGACCGCACTAGCTTCCGAATTCATGGAATCGAAGGGATCTCTGAGGGTGAAATCTTGTCTTCTCCTAGTCTTAAAGCCTTTGCATTCAATGAGCTAAAGAATGCCACGAGGAATTTTCGTCCCGATAGTCTACTTGGTGAAGGCGGATTTGGTCATGTTTATAAGGGGTGGATAGATGAACACACCTATACAGCTGCAAAACCTGGATCAGGAATGGTTGTTGCTGTTAAAAGACTTAAGCCTGAAGGTTTTCAAGGTCATAAGGAGTGGTTGACTGAAGTTAACTACCTTGGACAACTGCACCATcctaatttggtaaaattaattgGGTACTGCTTAGAAGGAGAAAACCGGCTATTGGTATACGATTTTATGCCTAAAGGGAGCTTAGGGAATCACTTATTCAGAAGAGGACCAGTACTGTCTAGTCTGTCTTGGTCAATAAGGATAAAAGTAGTTATTGGTGCTGCTAGAGGACTCTCTTTTCTTCACAATGCAAAATCACAAGTCATATACCGCGATTTCAAATCTTCTAACATCCTTTTGGACGCGGGGTTTAATGCTAAATTATCTGATTTTGGCTTGGCTACGGAGGGTCCTACCGGTGATAGAACTCACGTGTCTATTCAAGTTATGGGTACTCAAGGATATGCCGCACCTGAATATGTTGCAACTGGTCGGTTGACGGCCAAGAGTGATGTATACAGCTTTGGAGTTGTTATGCTTGAACTTTTATCCGGAAGACGTGCTTTCGATAAAACAATAGCTGGTGTTGACCAGAATTTAGTTGACTGGGCAAAACCATATTTAGGCGATAAACGGAGACTATTCCGGATCATGGATTCCAAATTAGAAGGCCGATATCCACAAAAAGGAGCATTCATGGCTGCTACGCTTGCGCTACAATGCCTTAACAGTGAAGCAAAGGCAAGGCCTAGACTCCATGCTCCTGTGAGAAGGTCTCCTGCTCGAAACCGGACGCCTTCAAATGTTCCTCCTACTGCATCGCCACTGCCATCTGTTCGGCAATCTCCTCGTGCACGCTAG 1185 0.4338 MDFKKLLRKPKHERRDALKLFNYDAQSSFSSFDSSISVYTCSTDLTDRTSFRIHGIEGISEGEILSSPSLKAFAFNELKNATRNFRPDSLLGEGGFGHVYKGWIDEHTYTAAKPGSGMVVAVKRLKPEGFQGHKEWLTEVNYLGQLHHPNLVKLIGYCLEGENRLLVYDFMPKGSLGNHLFRRGPVLSSLSWSIRIKVVIGAARGLSFLHNAKSQVIYRDFKSSNILLDAGFNAKLSDFGLATEGPTGDRTHVSIQVMGTQGYAAPEYVATGRLTAKSDVYSFGVVMLELLSGRRAFDKTIAGVDQNLVDWAKPYLGDKRRLFRIMDSKLEGRYPQKGAFMAATLALQCLNSEAKARPRLHAPVRRSPARNRTPSNVPPTASPLPSVRQSPRAR 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g01776 394 Gene3D Phosphorylase Kinase; domain 1 61 170 - -
Tsu05g01776 394 ProSitePatterns Protein kinases ATP-binding region signature. 91 123 IPR017441 GO:0005524
Tsu05g01776 394 CDD STKc_IRAK 91 366 - -
Tsu05g01776 394 PANTHER PROTEIN KINASE 2B, CHLOROPLASTIC 58 360 - -
Tsu05g01776 394 SUPERFAMILY Protein kinase-like (PK-like) 64 360 IPR011009 -
Tsu05g01776 394 MobiDBLite consensus disorder prediction 358 394 - -
Tsu05g01776 394 Gene3D Transferase(Phosphotransferase) domain 1 171 373 - -
Tsu05g01776 394 ProSitePatterns Serine/Threonine protein kinases active-site signature. 216 228 IPR008271 GO:0004672|GO:0006468
Tsu05g01776 394 Pfam Protein tyrosine and serine/threonine kinase 89 361 IPR001245 GO:0004672|GO:0006468
Tsu05g01776 394 ProSiteProfiles Protein kinase domain profile. 85 370 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu05g01776 394 PANTHER OS01G0588500 PROTEIN-RELATED 58 360 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g01776 Tsu-Chr5 18525558 18528396 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g01776 63 360 Glycoside Hydrolase AT3G07070 51.505 1.20e-103 311
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Tsu05g01776 PK_Tyr_Ser-Thr 4.2e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g01776 - - gmx:100809778 580.482
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g01776 05 18525558 18528396 Tsu04g03676 04 45820206 45824075 PCT