Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g01761 ATGAATAGAAAAAGGCGTCTAAATCAATCGACGACTCCAATCGATTCTCACCCCTTCGAAGCAGTTATCTTCGGGTCATGGCATCCAGTGGAGTTCACCATACATTTCGCAGATAATCACCATATGGTTATGGACAAAGGTACTTTATCAGACATTTGTATGAGGTCAAGGAAAACTACGGTGTCAGATTGCTCCTGTTTCTTACGTCCTGGAATCGACATCTGTGTGCTATCACGCCCTCAACGAGCCACTGACTCAGTTGGTTCAAAACTCGATCCCGTATGGATGGATGCTAGAATAAGTTCTATACAGAGAAAGCCCCATGGCTCAGAGTGCTCGTGTCAGTTTTTCGTCAATTTATATGTTGATCAAGGTTCACTTGGTTTAGAGATGAGAACTCTTTGTAAGGATATCAAAGTATTCAGACTCAACCAGATCACCATCCTCCAAAGAATTGAACATAGGCCTTGTGAAAATAAGCCCTACCGGTGGTCTTCATCCGAGGATTGCTCTTCACTGCCACACACTAAATTGCTTTTGGGAAACTTTTTAACCGATCTTTCATGGTTAATTGTTACATCAGTTCTCATGAAGGTTGAGTTCTGTGCAAGATCTGTTGAAAACAAGATGGTGTATCAAGTTTTGTTAGGTGATAATAGTATTAGCTCTTCGTCGAACACTGAGTCTCATATTGATGTTATCGGTTTCAAAAACGACAATGGCATGTTAGTACCGATTGCTTCTCAAGCGTGTGATGAAGGAGAAAATAAAGAAGAGCCTAACATGgctgatgaagatgatgatttcCATTTATTCCCAACTGATGCTAATCCTGAAGAACCGATATCGAAAGAAAACGAAAGCGTTTGGTCATTAATTCCTGAACTCAAAGAAAAGTTGCATGTGCACCAAAAGAAAGCTTTTGAGTTTCTTTGGCAAAACATTGCAGGGTCAACGAATCCAGGACTAATTGAAGCCAAATCCAAAAAGAGAGGTGGCTGTGTGATATCTCATACTCCTGGAGCCGGAAAAACTTTTCTCATCATTGCTTTTCTTGTTAGCTACTTGAAGTTATTCCTTGGGAAGAGGCCTCTAGTTCTTGCTCCTAAAACTACGCTCTATACTTGGTATAAAGAATTTTTCAAGTGGGAGATTCCTATACCGGTGTACTTGATTCACGGTCGTAGGACCTATTGGGTGTTCAATCAGAATTCAGTTGCGGTTCTTCCTGGAGTTCCCAAGCCTACCGATGATGTCAAACATGTTTTGGATTGCCTTGAGAAGATACAAAAATGGCATTCCCATCCGAGTGTTCTAATCATGGGCTACAGTTCGTTTTTAACATTGATGCGAGAAGATTCAAAGTTTGCACACATAAAGTTTATGGCGAAAGTGTTAAGGGAAAGTCCTCAACTCTTGGTACTTGATGAAGTTTACAATCCTAGAAGCACTAAATCAAGGTTgcgaaaatgtttgatgaaagtGCAAACAAAATTGAGAATATTACTTTCCGGTactttgtttcaaaataacttCTGTGAATACTTCAACACTCTATGCTTGGCAAGACCAACATTTGCACACGAAGTGTTGAAAGCATTAGACCCTAAatacaagaagaaaaagaaaggagtAGTAGGGAAAGGAGCAGAAAAAGTGCAATATATGATCGAGTCACGGGCTAGAAAATTCTTCTTAGATGCAATCGCTAAGAAAATTGACTCAAATGTTGGTGATGAAAGGCTGCAAGGCTTAAACATGATGAGAAATGTGACAAATGGATTTATCGATGTTTATGAAGGTGGAAGTGCTGATGGTTTACCTGGTTTACAAATTTATACATTGCTAATGAACACAACCGATATACAGCATGAGATTCTGAAGAAACTTCACAGCGACATGGCTAAGTGCAGTGGTTACCCTCTTGAGTTAGAGCTTTTGATAACTCTCGGATCAATACATCCTTGGTTGGTCAAAACCGCAGTTCTTATCTTTTGCCACAACATTGCTCCTGTGAAATTATTTCAAGAATATTTCGAGAAGTTCTTTGGATGGCAAAAAGGCCGCGAAGTATTAGTACTAACTGGGGAACTCGATCTCTTCGAACGTGGGAAAATAATGGATAAATTTGAGGAGCCTGGTAGTGTATCTAAGATACTACTTGCTTCAATTACATCCTGTGCTGAAGGCATTAGTTTGACAGCAGTGTCTCGTGTGATTATGTTGGATTCAGAGTGGAACCCTTCAAAAACAAAGCAAGCTATTGCGCGTGCGTTTCGTCCTGGTCAGCAGAAAATGGTTTATGTTTATCAGCTCTTGGTGACAGTTTCATTGGAAGAAGATAAATACCAAAGAAGCACGTGGAAAGAGTGGGTTTCGAGCATGATTTTCAGCGAGGCGTTTGTCGAGGATCCTTCTTCTTGGCAAGGTGAGAAGATTGAAGATGATATTCTAAGAGAAATGGTCGAGGAGGATAAGTCTAAATCATTTCATATGattatgaagaacgaaaaagcTTCAACAAACAACAGATAA 2535 0.3862 MNRKRRLNQSTTPIDSHPFEAVIFGSWHPVEFTIHFADNHHMVMDKGTLSDICMRSRKTTVSDCSCFLRPGIDICVLSRPQRATDSVGSKLDPVWMDARISSIQRKPHGSECSCQFFVNLYVDQGSLGLEMRTLCKDIKVFRLNQITILQRIEHRPCENKPYRWSSSEDCSSLPHTKLLLGNFLTDLSWLIVTSVLMKVEFCARSVENKMVYQVLLGDNSISSSSNTESHIDVIGFKNDNGMLVPIASQACDEGENKEEPNMADEDDDFHLFPTDANPEEPISKENESVWSLIPELKEKLHVHQKKAFEFLWQNIAGSTNPGLIEAKSKKRGGCVISHTPGAGKTFLIIAFLVSYLKLFLGKRPLVLAPKTTLYTWYKEFFKWEIPIPVYLIHGRRTYWVFNQNSVAVLPGVPKPTDDVKHVLDCLEKIQKWHSHPSVLIMGYSSFLTLMREDSKFAHIKFMAKVLRESPQLLVLDEVYNPRSTKSRLRKCLMKVQTKLRILLSGTLFQNNFCEYFNTLCLARPTFAHEVLKALDPKYKKKKKGVVGKGAEKVQYMIESRARKFFLDAIAKKIDSNVGDERLQGLNMMRNVTNGFIDVYEGGSADGLPGLQIYTLLMNTTDIQHEILKKLHSDMAKCSGYPLELELLITLGSIHPWLVKTAVLIFCHNIAPVKLFQEYFEKFFGWQKGREVLVLTGELDLFERGKIMDKFEEPGSVSKILLASITSCAEGISLTAVSRVIMLDSEWNPSKTKQAIARAFRPGQQKMVYVYQLLVTVSLEEDKYQRSTWKEWVSSMIFSEAFVEDPSSWQGEKIEDDILREMVEEDKSKSFHMIMKNEKASTNNR 844
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g01761 844 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2 254 661 - -
Tsu05g01761 844 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2 662 841 - -
Tsu05g01761 844 Pfam SNF2-related domain 296 529 IPR000330 GO:0005524|GO:0140658
Tsu05g01761 844 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2 19 253 - -
Tsu05g01761 844 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 325 525 IPR014001 -
Tsu05g01761 844 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 284 527 IPR027417 -
Tsu05g01761 844 Gene3D - 275 562 IPR038718 -
Tsu05g01761 844 SMART helicmild6 673 762 IPR001650 -
Tsu05g01761 844 CDD SF2_C_SNF 662 773 - -
Tsu05g01761 844 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 19 253 IPR044567 GO:0080188
Tsu05g01761 844 SMART ultradead3 296 534 IPR014001 -
Tsu05g01761 844 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 605 825 IPR027417 -
Tsu05g01761 844 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 254 661 IPR044567 GO:0080188
Tsu05g01761 844 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 662 841 IPR044567 GO:0080188
Tsu05g01761 844 Gene3D - 646 838 IPR027417 -
Tsu05g01761 844 Pfam Helicase conserved C-terminal domain 659 761 IPR001650 -
Tsu05g01761 844 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 652 809 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g01761 Tsu-Chr5 18215724 18219909 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g01761 686 790 RAD5 or RAD16-like Gene Family AT5G43530 35.238 4.22e-10 62.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Tsu05g01761 SNF2_N 9.2e-15 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g01761 K10875 - gmx:100811703 961.059