Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g01752 atgaagatattACAGCCACAGGCACAGTCCTGTACAACCACTACAAACCGATTTTCAGTCCCAACTCACTCTTTCATCACTCCAAAATTATCCATTCCTTTAAGGCATGTGGGTCCCACTTTCTCCTCCACTCTCCTACAATTCTCTGTCACATGTCGCCGTCCATATCCTTTCCAACCCAAACAATCCCCCCCACcaccatcatcttcttcttcagTGGGAGAATTGCCAGCAAAGGTTTATGTTGGTCATTCAATTTACAAAGCAAAAGGTGTACTCACCGTGTCTCCTAGATCTCCACAATTCATTAGACTGAATTCAGGATCATGGGCATTCAAGACATCTAAAGAAGGTAGTGTCATGTTAGAGTTTGCTCCTTCTGCCGGTGCGTATCTATATGATTGGAATAGAAAACAGGTATTTTCGCTATCTGTGGATGAAATAGGAAATCTAATTAACCTTGGTCCAAAGGAGTCTTGTGAATTTGTTCATGATCTGTCTGTTGGAAGAAGTGACACTAAAGTGACAAAAGTTTTGAAGGTGGAGCCACTTCTCGACCGTTCTGGTCACATGTTTAACATAAGTGTTCAAAACAAGCTCGAGAACATAAATGAAAACATATTAATCCCTGTGACAAAAGCAGAGTTTGCAGTTTTCAATTCACTTTTCGAATTTATCCTGCCATGCCTTTTAGGTTGGAATGCCTTTGCCAACACCATAAATCCAGAAGTAAATAATGCAAATCCAAGAATAGAAGAAGATTTTGAATGGAACAGATTCAACAGAATAATGTGA 795 0.3862 MKILQPQAQSCTTTTNRFSVPTHSFITPKLSIPLRHVGPTFSSTLLQFSVTCRRPYPFQPKQSPPPPSSSSSVGELPAKVYVGHSIYKAKGVLTVSPRSPQFIRLNSGSWAFKTSKEGSVMLEFAPSAGAYLYDWNRKQVFSLSVDEIGNLINLGPKESCEFVHDLSVGRSDTKVTKVLKVEPLLDRSGHMFNISVQNKLENINENILIPVTKAEFAVFNSLFEFILPCLLGWNAFANTINPEVNNANPRIEEDFEWNRFNRIM 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g01752 264 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY2, MITOCHONDRIAL 59 259 IPR013742 GO:0003697|GO:0006355|GO:0006952
Tsu05g01752 264 SUPERFAMILY ssDNA-binding transcriptional regulator domain 79 259 IPR009044 GO:0003677|GO:0006355
Tsu05g01752 264 Gene3D Transcriptional Coactivator Pc4; Chain A 73 250 IPR009044 GO:0003677|GO:0006355
Tsu05g01752 264 Pfam Whirly transcription factor 86 221 IPR013742 GO:0003697|GO:0006355|GO:0006952
Tsu05g01752 264 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY1, CHLOROPLASTIC 59 259 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g01752 Tsu-Chr5 18142373 18145902 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g01752 8 259 Whirly Transcription Factor Family AT1G14410 53.696 4.27e-86 256
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Whirly Tsu05g01752 Whirly 1.2e-46 CL0609
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g01752 - - lang:109355868 263.077
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g01752 05 18142373 18145902 Tsu05g01752 05 18142373 18145902 ECH
Tsu05g01752 05 18142373 18145902 Tsu05g01752 05 18142373 18145902 PCT