Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g01748 ATGGCAAAATTATACTATTTCTTCCTTTTGACCTGTTTAGTGGTAATCATACCTACATTAGTGCATGCTaatgtcaaagaagaaaaatcatACTGGGATAAGGTGTCTCCGACGCTTAATGATGCATATTGGAGGGAAAAAGCAACAAATGCTGAAAAGGTGAACGACGAAGCTTATACTCCTGACCCATATGAAGTCTCCGGAAACCTGACTTCTAGCGTTAGCGAAATGATAATTGGCGGCAATAAAGGAAGAAGGAATCTGGGGACCCTTAAACATGGTCCATGCAAGGCTACAAACCCCATTGACAGGTGTTGGAGATGTGATCGTAACTGGGCAAACAACCGCAAGAAGCTTGCAGATTGTGTGCAAGGTTTTGGAAGGAAGACTACTGGTGGGAAAGCCGGTCCTATCTATGTGGTAACTGATTCCTCAGATAATGACATGGTGAATCCACGTCCAGGTACCCTTAGGCATGCAGTTACAAGAAATGGACCTTTGTGGATCATCTTCGCTCGTAGCATGAACATTAGGCTCAGCCAGGAACTCATAATGACAAGTGACAAGACCATTGATGGACGAGGAACTGATATTGTCATTGCAAATGGTGCTGGTATTACTATCCAGTTCATCGGGAATGTGATCATCCATGGGATCAAAATTTTTGACATTCATGTTGGCACTGGTGGACTTATTAGAGATGCTGAGAACCATTATGGTCTAAGGACTATGAGTGATGGTGATGGAATTTCAATTTATGCATCCAGCAATGTTTGGATTGACCATGTTTCGATGAGAAACTGCAGAGACGGACTCATTGATGCCATTATGGGATCCACTGCTATTACCATCTCCAATAGCCATTTCACAGATCACAACGAGGTGATGCTGTTTGGTGCAAGTGATGGCTATGATGGTGATCAGAAAATGCAGATCACACTTGCATTCAACCACTTTGGTAAGAGATTAATCCAAAGGATGCCAAGGTGCAGATGGGGTTTTATCCATGTACTTAACAATGACTACACACACTGGGAAATGTATGCCATTGGAGGTAGCAAACACCCTACCATTATAAGCGAGGGTAATCGATTCATAGCCCCTAACAACGGCTATGCTAAAGAGATAACAAAGAGGGACTACTCACCAGAGTCGGAGTGGAAAACCTGGACATGGAGATCAATCAACGATGTGTACCTGAACGGAGCATTTTTCACACAAAGTGGATCTGTGCTGACTAACAGACCATTCTCCAGTAAGGACATGATCACAGCTAAACCTGGAACTTATGTGGGAAGGCTTACTCGTTATTCTGGAAGCCTTAAATGCAGAGTGGGAAGGCCTTGTTAA 1350 0.4281 MAKLYYFFLLTCLVVIIPTLVHANVKEEKSYWDKVSPTLNDAYWREKATNAEKVNDEAYTPDPYEVSGNLTSSVSEMIIGGNKGRRNLGTLKHGPCKATNPIDRCWRCDRNWANNRKKLADCVQGFGRKTTGGKAGPIYVVTDSSDNDMVNPRPGTLRHAVTRNGPLWIIFARSMNIRLSQELIMTSDKTIDGRGTDIVIANGAGITIQFIGNVIIHGIKIFDIHVGTGGLIRDAENHYGLRTMSDGDGISIYASSNVWIDHVSMRNCRDGLIDAIMGSTAITISNSHFTDHNEVMLFGASDGYDGDQKMQITLAFNHFGKRLIQRMPRCRWGFIHVLNNDYTHWEMYAIGGSKHPTIISEGNRFIAPNNGYAKEITKRDYSPESEWKTWTWRSINDVYLNGAFFTQSGSVLTNRPFSSKDMITAKPGTYVGRLTRYSGSLKCRVGRPC 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g01748 449 Pfam Pectate lyase 184 365 IPR002022 -
Tsu05g01748 449 SMART amb_all 174 371 IPR002022 -
Tsu05g01748 449 Gene3D - 99 442 IPR012334 -
Tsu05g01748 449 SUPERFAMILY Pectin lyase-like 100 439 IPR011050 -
Tsu05g01748 449 PANTHER PECTATE LYASE 18-RELATED 4 449 IPR045032 GO:0030570
Tsu05g01748 449 PRINTS Pollen allergen Amb family signature 146 171 IPR018082 -
Tsu05g01748 449 PRINTS Pollen allergen Amb family signature 420 443 IPR018082 -
Tsu05g01748 449 PRINTS Pollen allergen Amb family signature 122 139 IPR018082 -
Tsu05g01748 449 PRINTS Pollen allergen Amb family signature 326 345 IPR018082 -
Tsu05g01748 449 PRINTS Pollen allergen Amb family signature 390 414 IPR018082 -
Tsu05g01748 449 PRINTS Pollen allergen Amb family signature 246 267 IPR018082 -
Tsu05g01748 449 PRINTS Pollen allergen Amb family signature 348 367 IPR018082 -
Tsu05g01748 449 PRINTS Pollen allergen Amb family signature 182 198 IPR018082 -
Tsu05g01748 449 Pfam Pectate lyase, N terminus 40 88 IPR007524 GO:0030570
Tsu05g01748 449 PANTHER PECTATE LYASE 4 449 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g01748 Tsu-Chr5 18114160 18121400 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g01748 5 449 Polysaccharide Lyase AT1G14420 57.918 0.0 537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g01748 K01728 - gmx:100796307 741.88