Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g01740 ATGAATTTTTTGATGCGTTCTACATCAATTGTGTATTCAGAACACATATCGACTCCAGAACCTCGTGTTGATGCTCATCACAGGTCAGCATCCGCGGGATCTTATTACGAAAGTCATAAACATGATGTTCCATATTCAaaggttgatttgaattcaaaGCATCATGATTTACCGATTGTAGTTGTTGATAAACACATTGATGTTTCTGAAGAAGAAGGATGGATCACTATTCCATGCAAGGAACTTCCTGAAAATTGGAATAACGTGACAGATATACAATCGCTGCTACCTCTCGACCGTTCCTTTATTTTTCCGGGTGAACAAGTTCATATATTGGCATGCTTGTCTGCATGTAAGCAGAATACAAAAATTACTACTCCATTTAAAGTTGCTACAACAACAATTAAAAATGGAAAAGGTCAAAGTTCCGAGAAAGAAAGTGGAAgcattaaaaacataaataccTTAGTATCCGCGGAAGAGGAATTGAGTACCAGTGGTGAAGAGAAGTCGAGAAATCTTTTTTATGGTGACTCCCTTGTTGACATGGAGGAGGTTCACAAAAGACAAACTGCATTGTTGTtgcaaaaatttgaaaattctcACTTCTTCGTGAGAATTTCTGAGTCCGATGAACCCCTTTGGTCGAAAAGAAGCTCTGTAGATGATAATTCCTATTATTCCGAAGCAAATGGTCAAAAGGCCTCAACAATTAAAACTAAAGAGATTGCATTCCCTTCTACCAGTGTAGTTATTGATAAAGGAAATTTTGATGCAACTACTTGTGGCGGAATGGCAAGAAATTCTGCTAAGTGTTTTGCTTTACCCAATGGAGACATAGTGGTTCATTTACAAGCGAATGTTGATGTAAGTTTTCTTAAAGACCCTTGTATAGAAAttcttcaatttgaaaagtGTCGGGAGAGAACGAAGCCTCTGATAAGTCAGGTGGATGCAGTTTGTAAAAATCAAGATCCATGTGCAGAGCTGTTAAATTGGATATATCCTTTGGAAAATGGGAGGGCTCCTATTCGCCCGGTACCTCCTCATCATTTAACTTCAAATTCGGGAATTGGTAGCACTTCTCAATGGTCCAACTATTCAGCACCAACTAGCTCTCATTTATTCGGTTTCGGTAATTTTAGAAGCTACTCCATGTCATCATTACCCCAAACTACAAACCCGCCTAGTCTTCCTGTTAAAGCAGCTAGTTCTAAGGCAAGCTTTGAGCCAGACGATTGTGATCAAATTTCACCTAAAAaagttttctggaaaaaaattgGAGTAGACGAACTTTTATCTTTTCGAGGCGTCTCATTGGAGCGGGATAGGTTTTCCGTTTGTTGTGGATTAGAAGGCATCTATATACCTGGTAGAAGGTGGAGAAGGAAAGTTGAAATAATTCAACCTATAAAGATTCATTCTTTTGTTGCTAACATAAATTCAGAGGATCTTCTTTGTGTTCAGATAAAGAATGTTGCTCCTGCACATGCACCAGATATTGTGATATTTATAGATgcaataaatataattttcgaGGAGTCTACAAGAAATGTAGCAGTGTCGTCATTGCCAATTTTATGCGTGGAAGCTGGAAATGATCATTCTTTACCAAATCTAGCCCTCAGGATAGGTGAAGAACATTCTTTTATCCTTAAACCAGAAACTTCTACTTTGAAGAGTCTCAAAGCTCGAGATAATAGAACTTCCCGTTTTTTAAAGCTACAATAtgtaaataagaaatcaaaattcaGTATTGATCAATATGCAATTATGGTGTCATGTCGAAGCAATTATTCATCATCAAGTTGGTTCTTTAAACAACCAACTAGTTGGCGACCACGAAGCTCGAAAGATATCATGATCTCTATTGCATCACAAATGTCAGGAAAACCTCATGGAGCATATGAAAAAACTTATTGTCTTCCAGTGCAGATATTAACTCTTCAAGCTTCAAATTTGACATCTGAAGATCTAACTTTGACAGTGCTAGCTCCAGATTCATCTACTTCACCCCCTTCGGTGGTTTCCCTGAATACACCGAGGACTCCAAAGAGTCCTTTTATCGGTTTCGCAGAGTTTTTAGCAAAAGCAAATGGCGAAAGAAGTATTGGTACCAAATGGAAAAATGGATTGaattctattattaaaaaaaaggaggAACAAAGTTACGATCACAAAGCTTCGGAAATTTCTTCGAGTGATGATCATGATGTGATTCCTAGTTCCGGTATTACTTGTACACATCTATGGCTGCAAAGCAGAGTTCCACTTGGATGCATTCCATCAAAATCCGTAGTCACTGTCAAGATTGAACTACTTCCATTGACTGCTGGAATAATTACATTGGACTCTCTACAAATCGATGTCAAGGAAAAAGGTGTTGCCTATATTCCTGAATGCTCCCTAAAGATAAACTCAACTTCCTGCATTTGCAAGGGGGGAAATGAAATGAAGAGAAAGATAGAGCGAGAAGTTCTCCACCACCATAAGCTAAGGTTTCATTTCTCCAGAGAAGCTGTTCGTTCTATCCATTCAGAAGATGTTATACCACATGATCTTTTAATTCCTAGCTTAGGTAATCCACTTTCATCTATTGTTCAGAGCACTTATTTAGATCTATTGCACAACATGAATGATGCATCTTTTTTCCAAGATAGAGCTATATTagctcctaaaaatacaattgttgatgCAGTCAATGATTACGCGTTGACTTTAATTCCCGGAgaagaaacaacttatttgagttATGATTCTCCGTGTCATGCCAAATCAAATATTGACACACCAGATGATATTCATACACCTGAATTCTTAAATACCATCAGTGCTTCTGGAATTCCGAATCACAAGCTGAGATTAAAAGTTGGAGCACCGATAATGTTGCTCAGAAACATTGAACAATCTTTGGGGTTATGCAATGACATAAGGTTGATTGTTACAAAATTAGGAACATCTGCCATTGAAGGTAGAGTGATATCCGACAACAATATTGgtgaaaatgtttttattgCTAGGTTATCATTAACTCCTTCAGATAAAAGAACCCCTTTTAAGTTTCAACGTAGACAATTTCCATTGGTTGTTTCATTTTCTATGACTATCAACAAGATTCagTTCAGTTTCTGTTGTCTTACATCTCTGTTCTTACTCTCCACTTCCCAACCctttttcatcaaaatcatctCTTCAAAGGTTTTGTTATTGATGGGTTTGTTGGGTGCTGAGAAGAGTAAAGTGGTGGAGTCTTGGGATGTGTGTAAATCTAAggggaggaagaagaaaaagaagagtgaaGAGAATGAGGGTgttgttgaagagaaaaaaactgGGTGTTGGGTTGGGTTAGGGTTGTTTGGGAGCTGCATTTCTTCAAGATCCAAAGTTGATAGCTCAATCAGCGGCGCAAGTACTCATTATGCTGAAAGTAAATCAACTAACGATACGAGTAGAGGACAACCAACAGCTCCAGTAATATCTTCTACAACCACTAGTATTGCAGAAAGCAATTCCTCCACTTCTAAACTTGAAGACGAGATTAAAATTGCTTCTAGGCTGCGAAAGTTCACTTTCAATGAACTTAAGTTGGCAACAAGAAATTTCCGGCCCGAGAGTTTTCTTGGTGAAGGTGGGTTTGGTTGTGTTTTCAAGGGGTGGATCGAAGAGAATGGAACTGCTGCAGTGAAACCAGGCACAGGGCTTACTGTCGCTGTAAAAACGCTTAACCATGATGGGCTTCAGGGTCATAAAGAATGGCTGGCTGAGGTAAATTTTCTTGGCGATCTCGTTCATCAAAACCTTGTTAAACTCGTAGGTTACTGCATTGAAGATGATCAAAGGCTGCTCGTGTATGAGTTCATGGCTCGGGGAAGCttggaaaatcacttatttaggaGACCCTTGCCTCTTCCATGGTCTATTCGGATGAAAATTGCACTAGGAGCTGCTAAGGGTCTCGCTTTTCTTCACGAAGAAGCTGAACGGCCAGTAATTTATAGGGATTTTAAAACATCGAATATACTATTAGATGCAGATTACAATGCCAAACTCTCGGACTTTGGTCTTGCCAAAGATGGTCCTGAAGGTGATAAAACCCACGTGTCTACTCGAGTGATGGGAACCTACGGTTACGCCGCACCTGAATATGTCATGACAGGTCATCTCACATCAAAAAGTGACGTGTACAGTTTCGGAGTCGTACTGCTTGAGATGTTGAGCGGCAGAAGATCTATGGACAAACACCGACCCAACGGCGAGCATAACCTTGTCGAATGGGCTCGACCACATCTAGGAGAACGAAGACGGTTCTACCGGTTATTAGACCCTCGTCTTGAAGGTCACTTTTCCGTAAAAGGAGCTCAGAAAGCTGTTCAACTAGCCGCTCACTGCCTCAGTAGAGACCCGAAAGTCAGACCCTTAATGAGTGAAGTTGTCGAAGCTTTAAAGCCGCTTCCAAACCTTAAAGACATGGCAAGCTCTTCATACTATTTCCAATCAATGCAAGCCGAGCGGTTCAGTGCGAGTCCAAACACTCGAAGTGCACATGCACAAGGAGCATCACTTGCTCGGAACGGACAACAGCGAAGAACCCTTTCGATACCTAACGGTACTCATGTATCTCCTTACCACCATAAGTATCCCCAACAATCACCTAAACCTAATGAATTCACAAATCATCCAAAGGTGAGTTCTCTACCCTCCTTCCCACTCCTCATATCATGGAAGTTGTTATCTAGCTCTCATGACACCTGTCCTTGTCACCACATTCCCTTAGCCACTAATTACCTTTTTGGCCCTTCTAGAATATACCTTCCCTTCAACACTCCTTTCTTACGTGAGTACCCTTTTCTGAGGCCCATTAGTTACTTGGTGGATCAATTGTTTTTCTTCTCGTACTTTATCACCCTAATTCCAAAAGTTGATGCCCCTTGCAAGATTGGAGATTTTAGGCCTATCTCCCTTGTTGGGTCTCTGTATAAGCTTGTGTCCAAGTTGATTTCTCCGAATCAGTCGGCTTTTATTAAAGGTAGACAGTTGGTTGATGGTGTGGTGGCGGTTAACGAAATTATTGATCTTGCCAGAAAACTAAAGAAGGAGTGTTTCATTTTTAAAGTGGATTTCGAAAAGGCTTATGATTCAGTTAGTTCGAGCTTTCTTGATTACATGCTGCAAAGATTTGGGTTTGGTCCTAAGTGGCGTAGTTGGATTCGAACGTGTGTTTGTAATGGTAAATTAGCTGCTTTGGTCAATGGTTGCCCTACAGAGGAGGTGAATATTCATAGGGGTTTAAAGCAAGGGGACCCGCTAGCCCCTTTTATGTTTCTTTTAGTGGTAGAAGGGCTGAGTGGTGTTATTAGGAGAGCCGAGGATCTTGGGGAACCTTCAGTCCAGAATTTATGGTCAATTAAGACTATCCTTTGTTGTTTTGAGTTGGCTTCGGGTCTCAAAgataatttctttaaaagtaGTATCATGGGAGTTAACGTGAATACTGAGTTCCTTAGCCTAGCTGAAAGGTTTCTTCATTGTAACGTTGGATCTCTCCCTTTCACCTATATTGGTTTACCAGTAGGGGCTAACCCTCGGAGGGAGAGTACTTGGAAGCCTTTGTTGGAGTCTTTAGCCAGGAAACTTGAGGAATTTCCTTTGGGGGGTGCTAATCTGGATCGTAAGATTGCTTGGGTCAGTTGGGACAAGGTGTGTAGGCCAAAATCAGATGGAGGATTGGGTATAAGGGATCTTCGTGCTGTGAATCTAGCTTTGATAGGTCGTCCTTCTGGTTTTAGTGGGGCTTCTCTCTGGTGGAAAGATGTTTCCCTTTTAGGAACTTCTGTTGAGGTAACGTCTGATTGGTTCGCAGAGGGCATCATTAAAAGGGTGGGCGATGGATCTTGGTCTTCTTTCTGGTTTGATCCTTGGACTCTTCTAGCTGCCATAGAGAACCACCCTGTATTAGGGGATATCGGTTCTTGGTCTTGGAGACATGATTCTACTGGGATATTTTCGGTTAAGTCGGCTTACTTATTGCTTACGGCTGGTGTAGTTCCTAATGTTTTAGATTCTCTCTTAGCTAAGGTGTGGAAATCCTGGGCCCCGTCTAaagtgattgttttctcttGGCAATTACTTCAGGATAGAGTGCCAACTAGACAAAACCTTATGCAGCGTAGGGTGATTAGGGATCCTGGTAGTGCCTTATGCGCTTTTTGTGGGGCTTCAATGGAAGCGGTTGATCATCTGCTCGTTACTTGTGATTTTATTTCTCCTGTTTGGTACCCTATCTTTAGGTGGTTGGATTTTCGTTTTGTGTCTCCCATTAGCATTAAtagtgtttttcaaatttttctagGTTTTGGGATGGGTAGGAAGAATAGGTTAGGGTGA 6387 0.3897 MNFLMRSTSIVYSEHISTPEPRVDAHHRSASAGSYYESHKHDVPYSKVDLNSKHHDLPIVVVDKHIDVSEEEGWITIPCKELPENWNNVTDIQSLLPLDRSFIFPGEQVHILACLSACKQNTKITTPFKVATTTIKNGKGQSSEKESGSIKNINTLVSAEEELSTSGEEKSRNLFYGDSLVDMEEVHKRQTALLLQKFENSHFFVRISESDEPLWSKRSSVDDNSYYSEANGQKASTIKTKEIAFPSTSVVIDKGNFDATTCGGMARNSAKCFALPNGDIVVHLQANVDVSFLKDPCIEILQFEKCRERTKPLISQVDAVCKNQDPCAELLNWIYPLENGRAPIRPVPPHHLTSNSGIGSTSQWSNYSAPTSSHLFGFGNFRSYSMSSLPQTTNPPSLPVKAASSKASFEPDDCDQISPKKVFWKKIGVDELLSFRGVSLERDRFSVCCGLEGIYIPGRRWRRKVEIIQPIKIHSFVANINSEDLLCVQIKNVAPAHAPDIVIFIDAINIIFEESTRNVAVSSLPILCVEAGNDHSLPNLALRIGEEHSFILKPETSTLKSLKARDNRTSRFLKLQYVNKKSKFSIDQYAIMVSCRSNYSSSSWFFKQPTSWRPRSSKDIMISIASQMSGKPHGAYEKTYCLPVQILTLQASNLTSEDLTLTVLAPDSSTSPPSVVSLNTPRTPKSPFIGFAEFLAKANGERSIGTKWKNGLNSIIKKKEEQSYDHKASEISSSDDHDVIPSSGITCTHLWLQSRVPLGCIPSKSVVTVKIELLPLTAGIITLDSLQIDVKEKGVAYIPECSLKINSTSCICKGGNEMKRKIEREVLHHHKLRFHFSREAVRSIHSEDVIPHDLLIPSLGNPLSSIVQSTYLDLLHNMNDASFFQDRAILAPKNTIVDAVNDYALTLIPGEETTYLSYDSPCHAKSNIDTPDDIHTPEFLNTISASGIPNHKLRLKVGAPIMLLRNIEQSLGLCNDIRLIVTKLGTSAIEGRVISDNNIGENVFIARLSLTPSDKRTPFKFQRRQFPLVVSFSMTINKIQFSFCCLTSLFLLSTSQPFFIKIISSKVLLLMGLLGAEKSKVVESWDVCKSKGRKKKKKSEENEGVVEEKKTGCWVGLGLFGSCISSRSKVDSSISGASTHYAESKSTNDTSRGQPTAPVISSTTTSIAESNSSTSKLEDEIKIASRLRKFTFNELKLATRNFRPESFLGEGGFGCVFKGWIEENGTAAVKPGTGLTVAVKTLNHDGLQGHKEWLAEVNFLGDLVHQNLVKLVGYCIEDDQRLLVYEFMARGSLENHLFRRPLPLPWSIRMKIALGAAKGLAFLHEEAERPVIYRDFKTSNILLDADYNAKLSDFGLAKDGPEGDKTHVSTRVMGTYGYAAPEYVMTGHLTSKSDVYSFGVVLLEMLSGRRSMDKHRPNGEHNLVEWARPHLGERRRFYRLLDPRLEGHFSVKGAQKAVQLAAHCLSRDPKVRPLMSEVVEALKPLPNLKDMASSSYYFQSMQAERFSASPNTRSAHAQGASLARNGQQRRTLSIPNGTHVSPYHHKYPQQSPKPNEFTNHPKVSSLPSFPLLISWKLLSSSHDTCPCHHIPLATNYLFGPSRIYLPFNTPFLREYPFLRPISYLVDQLFFFSYFITLIPKVDAPCKIGDFRPISLVGSLYKLVSKLISPNQSAFIKGRQLVDGVVAVNEIIDLARKLKKECFIFKVDFEKAYDSVSSSFLDYMLQRFGFGPKWRSWIRTCVCNGKLAALVNGCPTEEVNIHRGLKQGDPLAPFMFLLVVEGLSGVIRRAEDLGEPSVQNLWSIKTILCCFELASGLKDNFFKSSIMGVNVNTEFLSLAERFLHCNVGSLPFTYIGLPVGANPRRESTWKPLLESLARKLEEFPLGGANLDRKIAWVSWDKVCRPKSDGGLGIRDLRAVNLALIGRPSGFSGASLWWKDVSLLGTSVEVTSDWFAEGIIKRVGDGSWSSFWFDPWTLLAAIENHPVLGDIGSWSWRHDSTGIFSVKSAYLLLTAGVVPNVLDSLLAKVWKSWAPSKVIVFSWQLLQDRVPTRQNLMQRRVIRDPGSALCAFCGASMEAVDHLLVTCDFISPVWYPIFRWLDFRFVSPISINSVFQIFLGFGMGRKNRLG 2128
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g01740 2128 Gene3D Phosphorylase Kinase; domain 1 1176 1287 - -
Tsu05g01740 2128 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 871 1040 IPR027417 -
Tsu05g01740 2128 MobiDBLite consensus disorder prediction 1513 1554 - -
Tsu05g01740 2128 ProSitePatterns Protein kinases ATP-binding region signature. 1208 1240 IPR017441 GO:0005524
Tsu05g01740 2128 Pfam zinc-binding in reverse transcriptase 2002 2092 IPR026960 -
Tsu05g01740 2128 Pfam Reverse transcriptase (RNA-dependent DNA polymerase) 1638 1788 IPR000477 -
Tsu05g01740 2128 SUPERFAMILY Protein kinase-like (PK-like) 1180 1482 IPR011009 -
Tsu05g01740 2128 Pfam PIF1-like helicase 849 984 IPR010285 GO:0000723|GO:0003678|GO:0006281
Tsu05g01740 2128 PANTHER EXPRESSED PROTEIN 1 813 - -
Tsu05g01740 2128 Pfam Protein tyrosine and serine/threonine kinase 1207 1482 IPR001245 GO:0004672|GO:0006468
Tsu05g01740 2128 CDD STKc_IRAK 1208 1485 - -
Tsu05g01740 2128 PANTHER EXPRESSED PROTEIN 1 813 - -
Tsu05g01740 2128 MobiDBLite consensus disorder prediction 1141 1171 - -
Tsu05g01740 2128 ProSiteProfiles Protein kinase domain profile. 1202 1488 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu05g01740 2128 Gene3D Transferase(Phosphotransferase) domain 1 1288 1503 - -
Tsu05g01740 2128 MobiDBLite consensus disorder prediction 1513 1538 - -
Tsu05g01740 2128 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1331 1343 IPR008271 GO:0004672|GO:0006468
Tsu05g01740 2128 CDD RT_nLTR_like 1635 1858 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g01740 Tsu-Chr5 18024663 18047084 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g01740 1149 1482 Glycoside Hydrolase AT3G07070 53.709 4.13e-108 350
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Tsu05g01740 PK_Tyr_Ser-Thr 4.6e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g01740 - - mtr:MTR_5g038440 1182.93
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g01740 05 18024663 18047084 Tsu05g01740 05 18024663 18047084 ECH