Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g01738 atggaatcaaattcaattacaataaaacaatCCTTCGAAGAATTTTACTCACACCACGCACGCGAATCGCTCGACGAATTGTCTGAAAATTTCACAATAACAGACCCTTCAATTTCAGGTCATCCTATAATATTCGCTAGTCACGCGTTTCTTAAGATGACTGGTTTCACGCGCGATGAAGTTGTTGGACGAAGTGGTTCCATTTTTCAAGGTCCTGCTACTTGTCGTAGGTCGGTGTTGGAAATTCGTGAAGCTGTTAGAGAAGAAAGAGAGACTAATGTTGTTTTGGTTAATTATCGTAAAAATGGAACACCCTTTTGGATTTTGTTGAATGTTTCTCCTGTTTTTTGTAAACTTCGTGGTTCTGTTGTTCATTTTGTTGCTGTTCAGGTTCCTTTAGATACAAGATCGAGGGTTTCTAGTAGTAGTAATAGTAATTCTCTTCAGGttcatgattttgtttttcgttGTTGTCGGAAAGAAGTTTGTTCTGATTCTTTGGCTGAACTTGGTCGTGTTTCTTCCGGGAATCAAGTGATCGAAAATGATGTCACGGAATTGGAGAGTGAAGAGCCACGTGAGGCAAGCGACGATGAGAGGAGAAGTGCTGTGACTGCCATCGACAACATCTTTTCTGTGCTAACCCACTATAGCGAGTTGACGGGAAGATTGGTGTGTAGAAAGAGATGCAGCACTCCTGACGTGGGTCTTCTTAGCTCGTCCTTGATTATTTCTCTTGGTAGAATCAAGCAAAGCTTTGTATTGTGA 768 0.3932 MESNSITIKQSFEEFYSHHARESLDELSENFTITDPSISGHPIIFASHAFLKMTGFTRDEVVGRSGSIFQGPATCRRSVLEIREAVREERETNVVLVNYRKNGTPFWILLNVSPVFCKLRGSVVHFVAVQVPLDTRSRVSSSSNSNSLQVHDFVFRCCRKEVCSDSLAELGRVSSGNQVIENDVTELESEEPREASDDERRSAVTAIDNIFSVLTHYSELTGRLVCRKRCSTPDVGLLSSSLIISLGRIKQSFVL 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g01738 255 ProSiteProfiles PAS repeat profile. 16 65 IPR000014 -
Tsu05g01738 255 PANTHER PROTEIN TWIN LOV 1 1 255 - -
Tsu05g01738 255 PANTHER PROTEIN TWIN LOV 1-LIKE 1 255 - -
Tsu05g01738 255 SUPERFAMILY PYP-like sensor domain (PAS domain) 32 130 IPR035965 -
Tsu05g01738 255 TIGRFAM sensory_box: PAS domain S-box protein 43 124 IPR000014 -
Tsu05g01738 255 Pfam PAS domain 41 130 IPR000014 -
Tsu05g01738 255 CDD PAS 43 116 IPR000014 -
Tsu05g01738 255 SMART pac_2 93 136 IPR001610 -
Tsu05g01738 255 Gene3D PAS domain 30 232 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g01738 Tsu-Chr5 18002265 18007265 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g01738 17 170 AGC Kinase Gene Family AT5G58140 31.447 9.17e-22 92.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g01738 05 18002265 18007265 Tsu05g01738 05 18002265 18007265 ECH