Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g01730 ATGGCAGGTGGCAAGCTTTTTGGTGGTTCTAATATGTCACTTTTGCTTCAAAATGAAAGACTCCCTTGTTCTTCTGATGTCCTTGAATCTCTTTGGGTTCATACCCCTGCCTCTTTTCATGGTTCAAATTCAgtggttgattttgagaatggtggtggtggtggaagcAGAGTAGTAACAGATAGATCCTTCTTTCAACAACttgagaaagaagagaattgtggtgatgatgattatgaagCATGTTTCCATCAACAAGGTAAAAAAAGGAGGCTTTCAAGTGAACAAGTTCAGTTTCTTGAAAAAAGCTTTGAGGTAGAAAACAAACTTGAACCTGAAAGGAAAGTTCAACTTGCTAAAGATCTTGGTTTACAACCAAGACAAGTTGCTATATGGTTCCAAAATAGAAGAGCAAGGTTCAAAACAAAGCAACTTGAAAAAGATTATGGCACATTGAAAGCTAGTTTTGATAATCTCAAAGATGATTATGATAATCTTCTTCAAGAGAATGACAAGTTAAAAGAAGAGGTGAATTCACTCAAGAACAAATTGAATCCAAGAgacaaagagaaagagaaatcaGAAGACAAAGAAGCTATCAATTCACCTCACAACAACAAAGATTCTATGGATTTAATCTCAATAGCAAATTCTTCAAAAGGGTCAAAAATGTCACACcctaatatggtactaaaatGTAAACAAGAAGATGCTAATTCAGCTAAAAGTGATGTGCTTGATTCTGATAGCCCACATTGCAATGATGTGAACAATCTTTCTTCATTCATTGAGCCAACAGATTCTTCACATGTTTTTGAACCTGATCACTCTGATTTCTCACAAGATGAAGATGATAATGATAACTTGAGTGATAATCTTTTGactcttccaaagattgaagaTGTTTGTTACGATGACACACATGAAAATTCTTGTAATTTTGGGTTTCCTGTTGAAGATCAAACTTTTTGTTTCTGGCCTTATTGA 987 0.2999 MAGGKLFGGSNMSLLLQNERLPCSSDVLESLWVHTPASFHGSNSVVDFENGGGGGSRVVTDRSFFQQLEKEENCGDDDYEACFHQQGKKRRLSSEQVQFLEKSFEVENKLEPERKVQLAKDLGLQPRQVAIWFQNRRARFKTKQLEKDYGTLKASFDNLKDDYDNLLQENDKLKEEVNSLKNKLNPRDKEKEKSEDKEAINSPHNNKDSMDLISIANSSKGSKMSHPNMVLKCKQEDANSAKSDVLDSDSPHCNDVNNLSSFIEPTDSSHVFEPDHSDFSQDEDDNDNLSDNLLTLPKIEDVCYDDTHENSCNFGFPVEDQTFCFWPY 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g01730 328 Pfam Homeodomain 88 141 IPR001356 GO:0003677
Tsu05g01730 328 CDD homeodomain 88 144 IPR001356 GO:0003677
Tsu05g01730 328 Pfam Homeobox associated leucine zipper 143 184 IPR003106 GO:0006355|GO:0043565
Tsu05g01730 328 SUPERFAMILY Homeodomain-like 77 145 IPR009057 -
Tsu05g01730 328 Coils Coil 149 183 - -
Tsu05g01730 328 MobiDBLite consensus disorder prediction 177 204 - -
Tsu05g01730 328 Gene3D - 82 149 - -
Tsu05g01730 328 MobiDBLite consensus disorder prediction 267 288 - -
Tsu05g01730 328 ProSitePatterns 'Homeobox' domain signature. 118 141 IPR017970 GO:0000981|GO:0006355
Tsu05g01730 328 PRINTS Lambda-repressor HTH signature 114 123 IPR000047 GO:0003677
Tsu05g01730 328 PRINTS Lambda-repressor HTH signature 123 139 IPR000047 GO:0003677
Tsu05g01730 328 ProSiteProfiles 'Homeobox' domain profile. 83 143 IPR001356 GO:0003677
Tsu05g01730 328 MobiDBLite consensus disorder prediction 177 210 - -
Tsu05g01730 328 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 1 328 IPR045224 GO:0003700
Tsu05g01730 328 PANTHER HOMEOBOX LEUCINE ZIPPER FAMILY PROTEIN 1 328 - -
Tsu05g01730 328 SMART HOX_1 86 147 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g01730 Tsu-Chr5 17907834 17910327 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g01730 36 255 Homeobox Transcription Factor Family AT3G01470 41.991 4.03e-43 148
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Tsu05g01730 Homeodomain 5.1e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g01730 - K09338 zju:107428804 384.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g01791 05 18989317 18991789 Tsu05g01730 05 17907834 17910327 PCT