Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g01716 ATGGACTTTTCTCAAATGGGTATTGATGATTATTACAAAATACTAAAGGTGAATCATGATGCAACCtatgaagaattgaagaaatcGTTTAACAATTTATCATTGAAATGGCACCCTGATAGGATTAAACAAAACCCTTTAAGGAAACAAGAGTTTGAGACAAAGTTTAAGAAAATTTCTGAGGCTTATGATGTTCTTAGTGATCCTAAGAAGCGTCAGATCTATGATAAGTATGGTAAATATCCTATGAATTTTGATGAATATGGTGATGGGAATAATATTAAGGTAGATGAAGATGTTGGAGCTGTTGAGACTGAGTTTTATTGTACTCTTGAAGAGCTTTATAGGGGTTGCAGAAAGAAGCTTAAGATTATAAGGACTGTTCCTGATGGGTTTGGAAAATCAAAGTCTGTAGATGAACTTTTGAAGATATCTATTAAACCTGGTTGGAAAAAGGGAACAAAAATCACCTTTCCGGAGAAAGGAAATGAACTACCAGGATCTCCTCCATCTGATCTAATCTTTGTGGTGATGGAGACACCACATGTTATATTCAAAAGGGATGGAAATGATTTGATAATGACTAAAAAGATATCACTTCTAGAAGCTCTTGTTGGAACGACTTTCAACGTAACAACCTTGGATGGAAGAGATATCACAGTTGAAGTGACTGATCTTGTGACGCCACGATATGAAAAGGTGGTTTCTGATGAAGGTATGCCACTCGCAAAGGAACCAAGTAAGAAAGGAAACCTTAGAATCAAGTTTCATGTTGAGTATCCATCAATGCTGACCTCCCTACAAAAGCATGATGTAAGAAGGATTTTGCGTGATGCTACATACGACTAA 849 0.3545 MDFSQMGIDDYYKILKVNHDATYEELKKSFNNLSLKWHPDRIKQNPLRKQEFETKFKKISEAYDVLSDPKKRQIYDKYGKYPMNFDEYGDGNNIKVDEDVGAVETEFYCTLEELYRGCRKKLKIIRTVPDGFGKSKSVDELLKISIKPGWKKGTKITFPEKGNELPGSPPSDLIFVVMETPHVIFKRDGNDLIMTKKISLLEALVGTTFNVTTLDGRDITVEVTDLVTPRYEKVVSDEGMPLAKEPSKKGNLRIKFHVEYPSMLTSLQKHDVRRILRDATYD 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g01716 282 SUPERFAMILY HSP40/DnaJ peptide-binding domain 185 270 IPR008971 GO:0006457|GO:0051082
Tsu05g01716 282 Gene3D DnaJ domain 3 98 IPR036869 -
Tsu05g01716 282 PANTHER DNAJ HOMOLOG SUBFAMILY C MEMBER 6 278 - -
Tsu05g01716 282 PRINTS DnaJ domain signature 12 30 IPR001623 -
Tsu05g01716 282 PRINTS DnaJ domain signature 30 45 IPR001623 -
Tsu05g01716 282 PRINTS DnaJ domain signature 51 71 IPR001623 -
Tsu05g01716 282 PRINTS DnaJ domain signature 71 90 IPR001623 -
Tsu05g01716 282 SUPERFAMILY Chaperone J-domain 5 93 IPR036869 -
Tsu05g01716 282 SUPERFAMILY HSP40/DnaJ peptide-binding domain 104 182 IPR008971 GO:0006457|GO:0051082
Tsu05g01716 282 Gene3D - 182 262 - -
Tsu05g01716 282 Pfam DnaJ C terminal domain 103 261 IPR002939 -
Tsu05g01716 282 ProSitePatterns Nt-dnaJ domain signature. 56 75 IPR018253 -
Tsu05g01716 282 Pfam DnaJ domain 10 76 IPR001623 -
Tsu05g01716 282 SMART dnaj_3 9 71 IPR001623 -
Tsu05g01716 282 CDD DnaJ_C 103 264 - -
Tsu05g01716 282 PANTHER DNAJ HEAT SHOCK FAMILY PROTEIN 6 278 - -
Tsu05g01716 282 Gene3D - 101 180 - -
Tsu05g01716 282 CDD DnaJ 10 68 IPR001623 -
Tsu05g01716 282 ProSiteProfiles dnaJ domain profile. 10 79 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g01716 Tsu-Chr5 17717724 17720560 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g01716 11 78 C2H2 Transcription Factor Family AT1G74250 34.783 1.26e-08 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g01716 K09510 - gmx:100778440 369.777
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g01716 05 17717724 17720560 Tsu05g01716 05 17717724 17720560 ECH