Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g01714 ATGGATCATCAGTCCCTCATTAGGTTTGATGTGAGTCCTACCCGTGAACCTATCCTACAACTACGATTAGAACAAATCATTGACACGTCTCCTTGCTTCCATATTGATTTGAAATTCATCAACACAATTTTTCCATGGGGCTCCTATTTTAATACCAATGTGTATGATGAACGTACAAACAACGAAAGTTTTCCGATTCCTTCGAAAATCTTATGTCATTGTAGGGATAGCGACCGTAAAAGTGTTCTATATGACATGCTTTACTTTATATCTACCGACATAGTAGATGTGGTTCTACCGAGATTGGAAGAATGTGCTAGACAAATGGTTGCAGAGAATCATGGAGGCCTTGCCATATTGGAGATGGATTTGTTGATTCATATTAGTACAATAGACATTGTAGGTGAAGAAAATCAGAATGATAACGGTCAAGCCCAACAAATTGTGGGTTTGTTGAAGAGATCTCCAattgattatctttcttctatcTCGACTACAGAACGATGTTCGATTTGTTTGGAAGAGTTTGGCACTAGTTCAGAACTTGTTTCTACAAAATGCTCACATGTTTTTCATAAAGAGTGCATGGTTCCTTGGATCCAACAATGCATTGACTATTCATCTATTTATTCTTGTCCATTATGTCGATGTCAAATAATATGA 663 0.362 MDHQSLIRFDVSPTREPILQLRLEQIIDTSPCFHIDLKFINTIFPWGSYFNTNVYDERTNNESFPIPSKILCHCRDSDRKSVLYDMLYFISTDIVDVVLPRLEECARQMVAENHGGLAILEMDLLIHISTIDIVGEENQNDNGQAQQIVGLLKRSPIDYLSSISTTERCSICLEEFGTSSELVSTKCSHVFHKECMVPWIQQCIDYSSIYSCPLCRCQII 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g01714 220 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 133 220 IPR013083 -
Tsu05g01714 220 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 93 216 - -
Tsu05g01714 220 Pfam Ring finger domain 168 216 IPR001841 -
Tsu05g01714 220 SMART ring_2 169 215 IPR001841 -
Tsu05g01714 220 ProSiteProfiles Zinc finger RING-type profile. 169 216 IPR001841 -
Tsu05g01714 220 SUPERFAMILY RING/U-box 168 219 - -
Tsu05g01714 220 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 93 216 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g01714 Tsu-Chr5 17685687 17686349 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g01714 120 216 C3H Transcription Factor Family AT1G49850 30.928 1.96e-11 60.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g01714 - - mtr:MTR_5g006240 176.407