Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g01680 ATGGATCCAGCGCCAATAATCAACGCTGCTCCCAATACGCCGTCGTATCACCTACCGGAGATCTGGAACTTCCCGCCGTCCAAAACACCGCACTTCAGCCACGATTTCGGAGATTTTGCAATGGAAGATCCTGGTGCAGAGCAGAAACCGTTTAACCATGGCCGGAAAAGGCGTGACACGGTGGAGGATTCGGTTAAAGGCGTTTCCACTAGTAATGGCGGTGGCAATAGCAACGCTGTGaatgatggtggtggtggtgatggaaaAAGAAGTAAGACAAGGAATGAGATCAGTAAAGGTGAAGGAGAAGAAAACAGTTCAGGAAAGCATGCGGAAGAAACTAGTGATCAGCCAAATCCTAAGCAAGACTACATCCATGTCCGAGCTAGAAGGGGTCAAGCTACTGATAGCCACAGTCTTGCTGAAAGAGCTAGAAGGGAAAAGATTAGTGAAAGGATGAAAACTCTTCAGGATTTAGTCCCTGGTTGCAACAAGgtTATTGGTAAAGCATTGGTCCTTGATGAGATAATCAATTATATCCAATCACTTCATCACCAAGTAGAGTTTTTGTCGATGAAGCTTGAAGCAGTAAATTCAAGATTGACACCTGGTATTGAAGTGTATCCTCCTAAAGATTTTGATCAGCAAAGATATGATACAACCGCCATACCATTTgcttcagaagctacaagagaGTACAGCCGGGGTTCATCACCAGAGTGGTTACATATGCAGTTGGGAGGTGGTTTTGAAAGAGCAACGTAG 765 0.4222 MDPAPIINAAPNTPSYHLPEIWNFPPSKTPHFSHDFGDFAMEDPGAEQKPFNHGRKRRDTVEDSVKGVSTSNGGGNSNAVNDGGGGDGKRSKTRNEISKGEGEENSSGKHAEETSDQPNPKQDYIHVRARRGQATDSHSLAERARREKISERMKTLQDLVPGCNKVIGKALVLDEIINYIQSLHHQVEFLSMKLEAVNSRLTPGIEVYPPKDFDQQRYDTTAIPFASEATREYSRGSSPEWLHMQLGGGFERAT 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g01680 254 MobiDBLite consensus disorder prediction 87 121 - -
Tsu05g01680 254 MobiDBLite consensus disorder prediction 35 64 - -
Tsu05g01680 254 MobiDBLite consensus disorder prediction 27 121 - -
Tsu05g01680 254 MobiDBLite consensus disorder prediction 65 79 - -
Tsu05g01680 254 CDD bHLH_AtBPE_like 123 206 - -
Tsu05g01680 254 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 1 254 IPR024097 GO:0006355
Tsu05g01680 254 Gene3D - 130 204 IPR036638 GO:0046983
Tsu05g01680 254 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 133 183 IPR011598 GO:0046983
Tsu05g01680 254 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 131 201 IPR036638 GO:0046983
Tsu05g01680 254 Pfam Helix-loop-helix DNA-binding domain 137 183 IPR011598 GO:0046983
Tsu05g01680 254 PANTHER BNAC05G07950D PROTEIN 1 254 - -
Tsu05g01680 254 SMART finulus 139 189 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g01680 Tsu-Chr5 17074932 17078855 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g01680 1 212 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G59640 51.271 8.80e-64 201
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Tsu05g01680 HLH 3.7e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g01680 - - gmx:100794893 309.301
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g01680 05 17074932 17078855 Tsu05g01680 05 17074932 17078855 ECH
Tsu05g01680 05 17074932 17078855 Tsu05g01680 05 17074932 17078855 PCT