Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g01678 ATGTTGGCAGAGATATGTTTAGGACTATTGTGCTCAAAAGTGTTTGTTGCTTTTCGTTTTGCAATGAGTTATGATCAATTGATTTTTGTCTGGTTGCGCTTGTTGGATTCGAAACAATTTTGTGTAGGTTTACTGAAGAAGGTTAATGAGCTCAGCACCCTTTGTGGGGTAGATGCTTGCGCAATCATCTATCCTGAAAACGGTGTTCAACCAGATGTTTGGCCACCCGGTCTGAGAACAAGAAATGTGTTAGGAAAGTTCCTGAGTTTGCCTGAacttgaaagaaacaaaaagatgTTGGATTCAGAGGGCTTCGTGAAGCAAACAATAGTGAAAAATCAAGCGTCGCTGAAGAAACAAGTTGAGGAAAACCATAAGAAATTTtccattttaattaataatgtctcTAAAAATTTAGAACATATTATCGGAGATGTGAACATTAATGAAACCAATAATCCAAAAATGGTTATTGGTAAGAAGCTGAATGAAGTCGAACAAAAGTTGAGTTCGATGAAAATCCAAGCTGGAGAGGAGGCTGAGAATGGAACTGAAACTATCAATTAA 567 0.351 MLAEICLGLLCSKVFVAFRFAMSYDQLIFVWLRLLDSKQFCVGLLKKVNELSTLCGVDACAIIYPENGVQPDVWPPGLRTRNVLGKFLSLPELERNKKMLDSEGFVKQTIVKNQASLKKQVEENHKKFSILINNVSKNLEHIIGDVNINETNNPKMVIGKKLNEVEQKLSSMKIQAGEEAENGTETIN 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g01678 188 Coils Coil 162 182 - -
Tsu05g01678 188 PANTHER MADS-BOX TRANSCRIPTION FACTOR FAMILY PROTEIN 43 175 - -
Tsu05g01678 188 SMART madsneu2 30 76 IPR002100 GO:0003677|GO:0046983
Tsu05g01678 188 CDD MADS_SRF_like 43 101 IPR033897 GO:0000981|GO:0000987|GO:0045944
Tsu05g01678 188 PANTHER MADS BOX PROTEIN 43 175 - -
Tsu05g01678 188 SUPERFAMILY SRF-like 43 101 IPR036879 GO:0003677|GO:0046983
Tsu05g01678 188 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 43 68 IPR002100 GO:0003677|GO:0046983
Tsu05g01678 188 Gene3D - 41 113 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g01678 Tsu-Chr5 17044271 17045587 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g01678 48 184 Type I MADS-box Gene Family AT5G48670 33.566 2.90e-21 87.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Tsu05g01678 SRF-TF 3.6e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g01678 - - mtr:MTR_2g016210 152.525