Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g01676 ATGCCGTCTCACGCGGATCTGGATCGACAGATCGAGCTTCTGATGGAGTGTAAGCCTTTACCGGAAGCGGATGTGAAAGCGCTTTGTGAACAGGCGAGAGCGATTCTTGTTGAAGAATGGAACGTTCAACCGGTGAAGTGTCCTGTTACGGTTTGTGGTGATATTCATGGTCAGTTTTACGATCTGATTGAGCTTTTTCGGATAGGTGGAAATGCTCCTGATACTAATTATCTCTTTATGGGAGATTATGTAGATCGTGGATACTATTCAGTGGAGACTGTTTCACTTTTGGTGGCACTGAAAGTTCGTTATAGAGATAGAATTACAATTCTCAGGGGAAATCACGAGAGCCGTCAAATTACTCAAGTGTATGGCTTCTACGATGAATGCTTGAGAAAATATGGAAATGCTAATGTCTGGAAATTCTTTACTGACTTGTTTGATTATTTACCTTTGACTGCACTCATTGAGAGTCAGATTTTCTGTTTGCATGGAGGTCTCTCGCCATCTTTGGATACACTGGATAATATCCGCGCCTTGGACCGCATACAGGAGGTTTGTGTGTTATTAAATGGCTATTGTAATTGGCGATCTTACAATTGCAACTTCTTTAATACTAAGTACATTTTTATGCTAAGCATGCTTGAGTTAAAGATCTTTTTACCCCCTAATGTATGGTATGAACATTAA 690 0.4043 MPSHADLDRQIELLMECKPLPEADVKALCEQARAILVEEWNVQPVKCPVTVCGDIHGQFYDLIELFRIGGNAPDTNYLFMGDYVDRGYYSVETVSLLVALKVRYRDRITILRGNHESRQITQVYGFYDECLRKYGNANVWKFFTDLFDYLPLTALIESQIFCLHGGLSPSLDTLDNIRALDRIQEVCVLLNGYCNWRSYNCNFFNTKYIFMLSMLELKIFLPPNVWYEH 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g01676 229 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE 1 187 - -
Tsu05g01676 229 SMART pp2a_7 20 224 IPR006186 GO:0016787
Tsu05g01676 229 ProSitePatterns Serine/threonine specific protein phosphatases signature. 111 116 IPR006186 GO:0016787
Tsu05g01676 229 Gene3D - 2 193 IPR029052 -
Tsu05g01676 229 Pfam Calcineurin-like phosphoesterase 48 185 IPR004843 GO:0016787
Tsu05g01676 229 PRINTS Serine/threonine phosphatase family signature 48 75 IPR006186 GO:0016787
Tsu05g01676 229 PRINTS Serine/threonine phosphatase family signature 110 134 IPR006186 GO:0016787
Tsu05g01676 229 PRINTS Serine/threonine phosphatase family signature 145 171 IPR006186 GO:0016787
Tsu05g01676 229 PRINTS Serine/threonine phosphatase family signature 77 104 IPR006186 GO:0016787
Tsu05g01676 229 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE PP2A-RELATED 1 187 - -
Tsu05g01676 229 SUPERFAMILY Metallo-dependent phosphatases 6 187 IPR029052 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g01676 Tsu-Chr5 17010669 17014849 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g01676 49 167 Calmodulin-binding Proteins AT5G63870 44.262 1.59e-26 102
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g01676 K04382 - gmx:100784312 380.178
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g01676 05 17010669 17014849 Tsu05g01676 05 17010669 17014849 ECH
Tsu05g01676 05 17010669 17014849 Tsu05g01676 05 17010669 17014849 PCT