Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g01672 ATGTCTCTGTCTCTATCTCGCACGTGCTCACAGTGCGGCAATAACGGCCACAACTCTCGAACATGCAACGACggaggaggtggtggtggtggtggtggagaaaACAGTATCATGATTTTCGGCGTTAAACTCACTGCAGGAACcaacaacaccaccaccacagCCGCCGCcactaccaccaccaccaccactatcAATCCTTTCAGAAAAAGTGCTAGCATGACAAACCTCTCTCAATATCAACAACAGCAGCCTCAAGATTCCACATCCGCCGATGCCGGTTATGTGTCTGATGATGTTGTTCATGCTTCCGGCCGATCCCGTGAACGCAAAAGAGGTGTTCCTTGGACCGAGGAAGAACACAAGTTGTTCTTGTTGGGGTTGCAACAGGTTGGTAAAGGTGATTGGAGGGGAATTTCTAGGAATTTTGTCAAAACTCGTACACCAACTCAGGTCGCAAGTCATGCTCAAAAGTATTTCCTCCGCCGTCATAACCAAAATCGCCGCCGCCGAAGATCTAGTCTCTTTGATATCACCACCGATACAgtgaTGGAATCTTCAACTATGATGGAAGATGAACAATTTCAACAAGAAACCATGGTGCCTCTACCTCCACCTACCCCCACTTCATATCCTTCCTCACACTACGGTGGCATCCCCGGGACCCCTTTCCCGATTGGTCTTGGTCCAGTAGCATTGCCGGTAATGAGTGGTGAAAGAGTAGCCAAGCCAATTAGACCAACACCAATGTTGCCTCCTTCTTCTAAGATGGCAAATTTGAACTTGAAAGACAAggcatcttcttcttcttccattgaGCCTTTCCCATTGTCATTGAAGTTGCATTCTCCGCCTCCGTCAAATGATCATTCACCGGAAACTAGCGGCCATTCGTCACCATCAGCTTCGTCATCGGCTTTTAATTCTATGTCTGCAGGAAATTATAGTAGTGGGGGTGGGGATAGCATAATCAGTGTTGCCTGA 984 0.4248 MSLSLSRTCSQCGNNGHNSRTCNDGGGGGGGGGENSIMIFGVKLTAGTNNTTTTAAATTTTTTTINPFRKSASMTNLSQYQQQQPQDSTSADAGYVSDDVVHASGRSRERKRGVPWTEEEHKLFLLGLQQVGKGDWRGISRNFVKTRTPTQVASHAQKYFLRRHNQNRRRRRSSLFDITTDTVMESSTMMEDEQFQQETMVPLPPPTPTSYPSSHYGGIPGTPFPIGLGPVALPVMSGERVAKPIRPTPMLPPSSKMANLNLKDKASSSSSIEPFPLSLKLHSPPPSNDHSPETSGHSSPSASSSAFNSMSAGNYSSGGGDSIISVA 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g01672 327 MobiDBLite consensus disorder prediction 263 327 - -
Tsu05g01672 327 PANTHER TRANSCRIPTION FACTOR KUA1 20 323 - -
Tsu05g01672 327 ProSiteProfiles Zinc finger CCHC-type profile. 9 22 IPR001878 GO:0003676|GO:0008270
Tsu05g01672 327 ProSiteProfiles Myb-like domain profile. 108 160 IPR001005 -
Tsu05g01672 327 Pfam Myb-like DNA-binding domain 115 160 IPR001005 -
Tsu05g01672 327 Gene3D - 114 165 - -
Tsu05g01672 327 CDD SANT 115 160 IPR001005 -
Tsu05g01672 327 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 108 164 IPR017930 -
Tsu05g01672 327 MobiDBLite consensus disorder prediction 1 23 - -
Tsu05g01672 327 SUPERFAMILY Homeodomain-like 110 163 IPR009057 -
Tsu05g01672 327 SMART sant 112 162 IPR001005 -
Tsu05g01672 327 ProSiteProfiles SANT domain profile. 111 164 IPR017884 -
Tsu05g01672 327 PANTHER TRANSCRIPTION FACTOR MYB1R1-LIKE 20 323 - -
Tsu05g01672 327 MobiDBLite consensus disorder prediction 284 327 - -
Tsu05g01672 327 MobiDBLite consensus disorder prediction 1 22 - -
Tsu05g01672 327 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 111 162 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g01672 Tsu-Chr5 16898120 16901736 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Tsu05g01672 Myb_DNA-binding 5.4e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g01672 - - mtr:MTR_5g037080 449.129
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g01672 05 16898120 16901736 Tsu05g01672 05 16898120 16901736 PCT