Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g01661 ATGATGTCTGAAAGGGATGAGGAATATGCTAATAAAAAATATGCTCGCGAATTTTACAATGAAGTAAGGAATAGATTTAAAGATCAGGAGCACAAGTTTAAGGATTTTATTACTGCCTTCGAAGATTGTAAAGAAGATAGAGACATTCCGGATTTTGCAACAAAAATGCAGAAAATATTAAAAGGCCATGAAGAtttgatgatgaaaataaaCGCACTCCTGCCAGATCGATACAAAATCGAGGATAAAAATACTAGCCCAAAGAAGCGTCCTAATTTGGAAGATGCTAAAAACTTTTTGAGAAAGATAAGGGCTCAATTTCAAGGGGTTGATGATCACATTTACAAATCATTGGTTGTCATACTGTATAGGTTTTATAGGAAAGTTAAGTCTTTCAATGAGGTTTGCCAAGAGGTTACTACACTTCTCAAAGACCACCCTGATCTTCTTGATGAATTTACTCAATTTCTTCCGGAGGGTATTTCTATACAAAAGACTATGCGTCCAGATATAAAGGAGATCTCCAATTCCAACGGTGTGGCAAATACAGGATCATACGTTTCACATAAGGAAGAGATAGAATCCAACTTTTGTTTGTTATCAAGAGTGCAAGTTCCCAACATCGCTTCGGAGGTCCAACTTAGTCATATTCCTTCCCTACTTAGCATTGGGGATTTTAGACCTATTTCCCTAGTGGGGTCCCTCTACAAAATTGTAGCTAAAATCCTTGCAAGGAGATTGGCAAAAGTCGTGGATAAATTAATTTCTCCAAACCAATCTGCTTTTATTAAGGGGAGACATCTAATGGATGAGGTTGTGGCCGTCGTTAATGAGATCATTGACCTAGCAAAGAAATCGAAGAAAGAATGTCTTATTTTTAAAGTGGATTTCGATAAGGCATATGACTCGGTTAGTTGGAGCTTCCTGGATTATATGATGATTAGGTTTGGATTTGGTGACGCGGGtttatttttctctcatctTCAGTATGCAGATGATACCCTGTTTATTGGAGAAGCTTCATTTGAAAATCTCTGGTCTTTGAAAGCTATTTTGCGTAGTTTTGAACTTGCATCTGGAAATTAA 1086 0.3619 MMSERDEEYANKKYAREFYNEVRNRFKDQEHKFKDFITAFEDCKEDRDIPDFATKMQKILKGHEDLMMKINALLPDRYKIEDKNTSPKKRPNLEDAKNFLRKIRAQFQGVDDHIYKSLVVILYRFYRKVKSFNEVCQEVTTLLKDHPDLLDEFTQFLPEGISIQKTMRPDIKEISNSNGVANTGSYVSHKEEIESNFCLLSRVQVPNIASEVQLSHIPSLLSIGDFRPISLVGSLYKIVAKILARRLAKVVDKLISPNQSAFIKGRHLMDEVVAVVNEIIDLAKKSKKECLIFKVDFDKAYDSVSWSFLDYMMIRFGFGDAGLFFSHLQYADDTLFIGEASFENLWSLKAILRSFELASGN 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g01661 361 Pfam Paired amphipathic helix repeat 113 157 IPR003822 GO:0006355
Tsu05g01661 361 SUPERFAMILY DNA/RNA polymerases 213 320 IPR043502 -
Tsu05g01661 361 Pfam Reverse transcriptase (RNA-dependent DNA polymerase) 224 319 IPR000477 -
Tsu05g01661 361 ProSiteProfiles PAH domain profile. 89 160 IPR003822 GO:0006355
Tsu05g01661 361 ProSiteProfiles PAH domain profile. 5 77 IPR003822 GO:0006355
Tsu05g01661 361 PANTHER SIN3B-RELATED 13 198 IPR039774 GO:0003714
Tsu05g01661 361 SUPERFAMILY PAH2 domain 85 159 IPR036600 GO:0006355
Tsu05g01661 361 SUPERFAMILY PAH2 domain 13 76 IPR036600 GO:0006355
Tsu05g01661 361 Gene3D Paired amphipathic helix 15 75 IPR036600 GO:0006355
Tsu05g01661 361 CDD RT_nLTR_like 222 360 - -
Tsu05g01661 361 Gene3D Paired amphipathic helix 85 160 IPR036600 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g01661 Tsu-Chr5 16609104 16611966 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Tsu05g01661 RVT_1 2.2e-18 CL0027
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g01661 K11644 - csin:114316718 138.272