Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g01660 ATGCCTAAacaatatcaaattaaatatgaagAATGTTTGCTAAGGAAGCGTCCTGAACCGGAAGATGCTACCAAAAATTTGAGAGAGATTAAGAAAATGAAGGATTCTTCCAATGAAACGAGTCAAATGTCTCTTGATCAAGCCAACATGTATCTCACTGAAATAAAAGATGCGTTTAAAGAGGATTTGGGAAAGTTCAATGAGTTTTTAAAGTCAATGAGAGATTTCACGACAAGAagAATTGATATGGTGGGTTTGAAGTCAAGAGTGAAGGAATTATTTAAAGGGCACAACcaattattaatgaaatttaaTGCCTTTTTGCCAAATGAAGCtgaagttgaagatgaagatgaagatgaagtttCTTCTCAACGACAGCCAATAGTGAATGTAGAATATGCTATGAAATATGTGCTCAATGTGAAGGTTATTTCTCTTTTTGAAGGCCACCAGGATCTTGTTGATGGGTTTATGGTTTTTCATGGGTTTGATAAAGACCCTCTGAGCAATAAATGGCACATCTTGgAAAAGAGGTTCATGCACAATCTTCGTCAGTATGACATGCCTCTTCACAAGTACATAGCCTTAATGGACCTTTCAAGTACGTACTTAATGTTCGCCCTTCATGGAGAGGAAAAGTACAAAAGCTACCGCAACAAAGTGCAGTAG 672 0.3393 MPKQYQIKYEECLLRKRPEPEDATKNLREIKKMKDSSNETSQMSLDQANMYLTEIKDAFKEDLGKFNEFLKSMRDFTTRRIDMVGLKSRVKELFKGHNQLLMKFNAFLPNEAEVEDEDEDEVSSQRQPIVNVEYAMKYVLNVKVISLFEGHQDLVDGFMVFHGFDKDPLSNKWHILEKRFMHNLRQYDMPLHKYIALMDLSSTYLMFALHGEEKYKSYRNKVQ 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g01660 223 Pfam Paired amphipathic helix repeat 65 108 IPR003822 GO:0006355
Tsu05g01660 223 ProSiteProfiles PAH domain profile. 41 111 IPR003822 GO:0006355
Tsu05g01660 223 SUPERFAMILY PAH2 domain 40 110 IPR036600 GO:0006355
Tsu05g01660 223 Gene3D Paired amphipathic helix 47 109 IPR036600 GO:0006355
Tsu05g01660 223 PANTHER SIN3B-RELATED 36 161 IPR039774 GO:0003714
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g01660 Tsu-Chr5 16578071 16588714 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g01660 51 138 WRKY Transcription Factor Family AT4G12020 36.364 1.28e-10 58.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Tsu05g01660 PAH 2e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g01660 K11644 - mtr:MTR_7g013410 95.1301