Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g01656 ATGAAGCGGTTACGAGACGATGGTTTCACGAGTTCATCTTCTCAACTCAAACGACCTATGTTATCTTCTAGAGGAGAACGAGAACCGTCTGGGCAACCTCAGATGATGAATGGAGCTGGTCAAAAACTGACTACTAATGATGCCTTATCGTATCTCAAGGCAGTAAAGGATATTTTTCAAGATAAGAGGGATAAATACGATGAATTTTTGGAGGTCATGAAAGAGTTTAAAGCACAAAGAATTGATACTGTGGGTGTCATAGCTAGAGTGAAGGATCTTTTTAGAGGTCACACAGATTTGATATTAGGATTCAACACCTTTTTGCCAAAGGGATATGAAATCACCCTTCCGATAGAGGATGAGCAACCTCAGCCAAAAAAGCCAGTTGAATTTGAAGAAGCTATGAGTTATGTGAACAAGATAAAGACTCGGTTTCGTGGTGATGATCGTGTTTACAAGTCATTTCTAGAAATATTGAATATGTACAGAAAGGAAAATAAGCCTATCGACGCAGTCTACCAGGAGGTTGCTGCACTCTTCGAAGACCACCCAGATCTTCTTGACGGGTTTATTACTTTTCTTCCGGACGCTACCACAGCTGCCTCTGCTCATGCTGCTGCTCGAAATTCTGTGTTTCGTGATAGGCGCTCTGCAATGCCAACAGTGCGGCAAACACATGTTGAAAAGAGAGAAAGGACCATTGTTTCACATGGTGACCGTGACCCCAGTGTTGACCGTCCTGATCCAGAGCATGATGGTGGTTTGTTCAGGGCAGAAAAGGAGCATAAGAGACGTGTGGAGAAGGAAAAGAGTCGCAGAGAAGATAGAGACAGGAGAGAACGAGAACGAAATGATAGAGATTATGAGCATGACAGGGGTCGAGATAGGGAGCGGTTATCCCACAAACGGAAATCTGATCATAAGGCTGAAGACTCGGGAGCTGAACCATCAATTCATGCAGATCAAAATTTTGGTATGTATAGTCAAGAGTTAGCTTTCTGTGCTGAAGTCAAAGAGAGATTACGAAATCCGGATGACTACCAGGAATTTTTGAAGTGTTTACATATTTACAGCAGGGAAATTATTACTCGACAAGAATTGCAGTCACTGGTGGGTGATTTACTGGGAAAGTATCCAGATCTTATAGAAGGGtttaatgattttttgcttCAAGCTGAGAAGAATGATGGTGGATTCCTTGTTGGTGTGATGAATAAAAAGTCCTTATGGATTGAAGGAAATGGACTGAAACCAATGAAGGCTGAACGGAGGGATAGAGATAGGGGTCATGATAAAGATCGTTACAGGGATGATGGGATGAAAGAAAGGGATCGTGAATTCCGAGAAAGGGATAAATCTAGTACGATTTCCAACAAGGATGTTTCAGGTTCTAAGATGTCTCTATATCCCAGCAAGGATAAGTATCTCtcaaaaccaataaatgagCTGGACCTTTCTAACTGTGAGCAATGCACTCCCAGTTACCGTCTCCTACCAAAAAATTATCCAATACCTATTGCTAGCCAGAGAACAGAACTTGGTGCGGAAGTGCTGAACGATCACTGGGTGTCGGTCACTTCAGGAAGTGAGGATTATTCCTTTAAACATATGCGCAAAAATCAGTATGAAGAGAGTTTGTTTAGATGTGAAGATGACAGGTTTGAACTCGATATGTTGTTAGAATCTGTAAACGTGACAACTAAACGAGTACAAGAGCTGTTAGAAAAGATCAACAATAATCTAATTAAAAGAGACAGCCCAATTCGTATTGAGGAACACTTAACAGCTCTAAATTTCAGGTGTATTGAACGAATATATGGTGACCATGGTCTTGATGCCTTGGAAGTGCTAAAGAAGAATGCATCCCTAGCTTTGCCAGTGATATTAACACGCTTGAAGCAGAAACAAGAAGAGTGGGAAAGATGTCGTGCTGATTTCAGTAAAGTATGGGCTGAAATATATTCCAAGAATTATCACAAATCTCTTGATCATCGTAGCTTCTACTTTAAGCAACAGGACACAAAAAGTTTGAGCACCAAAGCCTTACTGGCCGAAATCAAAGAAATCAATGAGAAAAAACTGAAAGAAGACGATGTTCTTCTTGCAAATGCTGCTGGAAATAGACGGCCTATTTTCCCAAACCTGGAGTTTGAGTATCTTGATCCACACATTCATGAAGATTTGTATCAGCTTATAAAATATTCGTGTGGAGAAGTTTGCACAACTGAACAGTTGGATAAAGTTATGAAGGTTTGGACAACATTTTTAGAATCCATGTTTTGTGTTCCTTGTCGGCCCCAGGGTGCTGAAGATACTGAAGATGTTGTTGTGGCTAAGAATAATTCTGCGAGAAATGTTGCTGAAAGTGATGGTAGTCCTGGGGTTGGCGCTACCATAGTGAACCCAAAGCATATAAATACTTCTAGAAATGGTGATGAGTGTGTGCCATTAGATCAGTCAACTTCTAGCAAAGCATGGGAATCAAATGGTGATACTGGGATTAGAGACGATAAATGCCTTGATTCAGATTGTACTGTGCGTAAAAGTGAAACCTGCGGCAGTAATCCACAACACAGTAAACCGGATATTACTTCATTCATGCCTACTGAGCTATCAGGAGTCAATATGCAAGATCTCCCTAGTGAGCGGTTAGTGAATGCTAATGTTGCGCCAGCATCTGGAATGGAGCTGAGTAATGGAAGTACAAAGATAGATAATGCATCAGGACTTGCTGCTACACCATCTAGAAACGGTAATGCATCTGTCGTGGGAGGACTTGAATTACCTTCATCAGAGGGTGATGATTCTGCAAGACCATGTACATCCACAAATGGGGCCGTCGCTGGAGCCACTGAAGTTTGCAGAGACCTAGAGGAATCAAATCGACAGTTCAAAAGCGAAAGAGAAGAGGGAGAGTTATCTCCAAATGGAGAATTTGAAGGGGAAGAAGCCAGGAGAGAAAATTATGCAGATGCTGATGATGAAGGGGACGAAAGTCCTCAGAGGTCATCGGAGGACAGTGAAAATGCTTCTGAAAATGGTGATGTTTCTGGAAGCGAATCTGCTGATGGCGAGGAGGGTTCTCGAGAAGAGCATGAAGATGGAGAACATGATAATAAGGCTGAAAGTGAAGGTGAAGCTGAAGGAATGGCTGATGCGCATGACATTGAAGGAGATGGAACGCCATTGCCATTTTCTGAACGCTTTCTTGTAAACGTGAAGCCATTGGCAAAGCATGTTCCCCCAGTGTTCCATGTTAAAGACAGGAATTCTCatgttttttatggaaatgACTCCTTTTATGTGCTGATTAGACTTCATCAGACATTGTATGAGAGGATACATTCAGCAAAGGTTAACGCATCATCCGCTGAAAGGAAATGGAGGGCTTCAAATGATACAAGCTCTACTGATCAATATGACAGGTTCATGAATTCCCTTTACAGTTTGCTGGATGGTTCTTCTGATAATACAAAATTTGAGGATGATTGTCGAGCTATTATTGGAACTCAATCATATCTCTTATTCACGTTGGACAAACTGATATATAAACTTGTTAAACAGCTTCAAGCTGTTGCGAGTGATGAGATGGATAATAAGCTTCTTCAACTATATGCATATGAGAAATCAAGAAAACATGAAAAGTTTGTCGATATAGTTTATCACGAAAATGCTCGTATTCTTCTTCATGATGAGAACATATATCGCATTGAATATTCACCAAAACCAAAGGCACTCTCTATTCAACTCATGGACTGTGGAAATGATAAGCATGAAGTGACTGCTGTATCAATGGACCCGGAATTTTCAGCCTATCTGTCCAATGATTTCCTCACTATTGTCCCCGACGAGAACAACTCGGGGATTTTCTTGAAAAGGAACAAACGGGGATATGCCTGTAGTGATGAATTTTCAAGTGAGGTTATGGAAGGACTACAAGTTATTAATGGTCTTGAGTGTAAGATAGCTTGCGATTCTTCCAAGGTGTCTTACGTTTTAGATACAGAAGACTTCTTGTTTCGGACTAGAAGCAGAAGAAAAGCTTTGCATCTGAAGAAGCTGGGAGTACTTTTCAAGTTTCGCTGGCAGAGGGCCGGATGTAAAAGACATTGTATCCTAGAAGTTGATAGAAGGATGTATGATATTTCACCATATTTTATTATAGTTAAACTAATAAAGGTTACAAAAGGGGAGGCATGGTGCTGCCAGAAGAGGAATAGAGATTATACTATACTGTAA 4239 0.406 MKRLRDDGFTSSSSQLKRPMLSSRGEREPSGQPQMMNGAGQKLTTNDALSYLKAVKDIFQDKRDKYDEFLEVMKEFKAQRIDTVGVIARVKDLFRGHTDLILGFNTFLPKGYEITLPIEDEQPQPKKPVEFEEAMSYVNKIKTRFRGDDRVYKSFLEILNMYRKENKPIDAVYQEVAALFEDHPDLLDGFITFLPDATTAASAHAAARNSVFRDRRSAMPTVRQTHVEKRERTIVSHGDRDPSVDRPDPEHDGGLFRAEKEHKRRVEKEKSRREDRDRRERERNDRDYEHDRGRDRERLSHKRKSDHKAEDSGAEPSIHADQNFGMYSQELAFCAEVKERLRNPDDYQEFLKCLHIYSREIITRQELQSLVGDLLGKYPDLIEGFNDFLLQAEKNDGGFLVGVMNKKSLWIEGNGLKPMKAERRDRDRGHDKDRYRDDGMKERDREFRERDKSSTISNKDVSGSKMSLYPSKDKYLSKPINELDLSNCEQCTPSYRLLPKNYPIPIASQRTELGAEVLNDHWVSVTSGSEDYSFKHMRKNQYEESLFRCEDDRFELDMLLESVNVTTKRVQELLEKINNNLIKRDSPIRIEEHLTALNFRCIERIYGDHGLDALEVLKKNASLALPVILTRLKQKQEEWERCRADFSKVWAEIYSKNYHKSLDHRSFYFKQQDTKSLSTKALLAEIKEINEKKLKEDDVLLANAAGNRRPIFPNLEFEYLDPHIHEDLYQLIKYSCGEVCTTEQLDKVMKVWTTFLESMFCVPCRPQGAEDTEDVVVAKNNSARNVAESDGSPGVGATIVNPKHINTSRNGDECVPLDQSTSSKAWESNGDTGIRDDKCLDSDCTVRKSETCGSNPQHSKPDITSFMPTELSGVNMQDLPSERLVNANVAPASGMELSNGSTKIDNASGLAATPSRNGNASVVGGLELPSSEGDDSARPCTSTNGAVAGATEVCRDLEESNRQFKSEREEGELSPNGEFEGEEARRENYADADDEGDESPQRSSEDSENASENGDVSGSESADGEEGSREEHEDGEHDNKAESEGEAEGMADAHDIEGDGTPLPFSERFLVNVKPLAKHVPPVFHVKDRNSHVFYGNDSFYVLIRLHQTLYERIHSAKVNASSAERKWRASNDTSSTDQYDRFMNSLYSLLDGSSDNTKFEDDCRAIIGTQSYLLFTLDKLIYKLVKQLQAVASDEMDNKLLQLYAYEKSRKHEKFVDIVYHENARILLHDENIYRIEYSPKPKALSIQLMDCGNDKHEVTAVSMDPEFSAYLSNDFLTIVPDENNSGIFLKRNKRGYACSDEFSSEVMEGLQVINGLECKIACDSSKVSYVLDTEDFLFRTRSRRKALHLKKLGVLFKFRWQRAGCKRHCILEVDRRMYDISPYFIIVKLIKVTKGEAWCCQKRNRDYTIL 1412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g01656 1412 MobiDBLite consensus disorder prediction 219 315 - -
Tsu05g01656 1412 ProSiteProfiles PAH domain profile. 127 197 IPR003822 GO:0006355
Tsu05g01656 1412 MobiDBLite consensus disorder prediction 420 464 - -
Tsu05g01656 1412 MobiDBLite consensus disorder prediction 207 320 - -
Tsu05g01656 1412 MobiDBLite consensus disorder prediction 1022 1055 - -
Tsu05g01656 1412 SUPERFAMILY PAH2 domain 327 391 IPR036600 GO:0006355
Tsu05g01656 1412 Gene3D Paired amphipathic helix 126 198 IPR036600 GO:0006355
Tsu05g01656 1412 PANTHER SIN3B-RELATED 1 1361 IPR039774 GO:0003714
Tsu05g01656 1412 SMART hdac_interact2seq4b 487 587 IPR013194 -
Tsu05g01656 1412 MobiDBLite consensus disorder prediction 959 1061 - -
Tsu05g01656 1412 SUPERFAMILY PAH2 domain 124 196 IPR036600 GO:0006355
Tsu05g01656 1412 Gene3D Paired amphipathic helix 47 109 IPR036600 GO:0006355
Tsu05g01656 1412 Gene3D Paired amphipathic helix 324 393 IPR036600 GO:0006355
Tsu05g01656 1412 MobiDBLite consensus disorder prediction 801 829 - -
Tsu05g01656 1412 Pfam Sin3 family co-repressor 489 580 IPR013194 -
Tsu05g01656 1412 MobiDBLite consensus disorder prediction 420 456 - -
Tsu05g01656 1412 MobiDBLite consensus disorder prediction 1 40 - -
Tsu05g01656 1412 ProSiteProfiles PAH domain profile. 320 392 IPR003822 GO:0006355
Tsu05g01656 1412 Pfam Paired amphipathic helix repeat 345 389 IPR003822 GO:0006355
Tsu05g01656 1412 Pfam Paired amphipathic helix repeat 64 108 IPR003822 GO:0006355
Tsu05g01656 1412 Pfam Paired amphipathic helix repeat 151 194 IPR003822 GO:0006355
Tsu05g01656 1412 MobiDBLite consensus disorder prediction 896 944 - -
Tsu05g01656 1412 ProSiteProfiles PAH domain profile. 41 111 IPR003822 GO:0006355
Tsu05g01656 1412 MobiDBLite consensus disorder prediction 786 831 - -
Tsu05g01656 1412 MobiDBLite consensus disorder prediction 896 920 - -
Tsu05g01656 1412 PANTHER PAIRED AMPHIPATHIC HELIX PROTEIN SIN3-LIKE 2 ISOFORM X1 1 1361 - -
Tsu05g01656 1412 SUPERFAMILY PAH2 domain 40 110 IPR036600 GO:0006355
Tsu05g01656 1412 MobiDBLite consensus disorder prediction 959 1009 - -
Tsu05g01656 1412 Pfam C-terminal domain of Sin3a protein 1094 1339 IPR031693 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g01656 Tsu-Chr5 16497821 16511321 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g01656 32 123 WRKY Transcription Factor Family AT4G12020 57.447 2.08e-23 106
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Tsu05g01656 Sin3a_C 8.5e-59 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g01656 K11644 - gmx:100811928 2040.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g01656 05 16497821 16511321 Tsu05g01656 05 16497821 16511321 ECH