Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g01650 ATGTCATTTCCAAAATGCCCCGATTTTAGGATAATAATATTGCAAGATCAGAAAATACGTAGGATTCCAAAGCTTTATGGGGAGAAATATTGGAAAGAAACACCAAACCCAATAATCCTTAGACTCCCAAATAgatttgaacaaaaaatatattgggtTGAGAGTAATGGTCaaattttgcttcaaaaaaattggataagTTTTGCAAAGCAACTAAGTCATGGATGTGTCTTAACTTTTAAATACATAGGTGGATCACATTTTAAGGTCAAGATATTTGGTCCCAATGGTTTAGAAATAAactattcaaatataaaatctgTATATGAAGAAGTTGTTGAAGCTACCGAAAAAGCTAAAGAAATTATTGAAGTGAGAGATGAAAGTGATGAAGAGATTGAAATATCAAGGCAAGCAAGAAATGGTGGCAAGAGAAAATTCCAAGGTAGGAACCAAGGAAATATGGTGAAGAAGGCTACAAAGTATCCAACAaatgaagctgttaatgatgaGAATCCCTTCTTTGAAGTTGTAATGACAAAATCTTATGTTGATGGCAATTTCATGTGGATACCAACGAAATTTTCAAGAGAACACTTGAACAATTATAATGGCATTTCAACCCTAAGTGTTGGTAAGGACGACCctataaaaatgaatataaggTATAATGATAACACTGAAAAATCAATGATGGGTGGTGCTTGGAAGCTCTTTagccaaaattataatttggaaATTGGCGATTCTTGTAAGTTTAAGATGACTCAACGTCGACCACCTTCATTCATTACTATTATTAATCGAGCTAGAAAAGGACCAAACCCTAAGAATTTGCaagGGATCTCTTATGATAATAATATTGCAAAGAGGAGAGACATTGGAGGAACTTCTAGGGGCCGTCCAAAAGTACATTTTGATGAGGATTCAGAGGGTGGTAATATGATGAAACATTTCAAGATTTTCGTGAAAGACAATCACCATTACCCTAATTTACCAAAGGAGTTTAACAGAATAGGATGTGATGACAATCGTGTGGAGTTGAAAATCGGGAGAAAATCGTGGTCTGTAAAAGTGAATTATTTTCATAGTACTAAACGCAGTAGATTCGGTGACGGTTGGGGACCATTTATTGAAGAATGCAATTTGATTGGAGAAACTTGCCTTGTTAAAAACCTAAGAATGGTTACGGTGTTCATGAAGATAGAGTACTTAGTTACATTTGAAAATTCCATCTTGCTAAGGAACTTGAGAATTAAGATTCTTCGTGGAAAATCAAAGACTCTAAGGATTCTCGGAGCAATAAAGAACGGAGCAGGAAAGCTTTCACTCAGAGAAGACAATTGTATGTTAGGTATGGGAAGCGGCCAACCAAACCGCACGGAGAATATAAGAATAGCAATGATGAAAGCTGGAGCTGATGTTAAAGGAGCAGTCTTGGCTAGAGATGCCTTCTTCCCATTTGCTTGGAAAGATGCTGTAGAAGAAGCATGTGAAATGAGTTATTTCAGTGCTCTGGTAGTATAA 1527 0.336 MSFPKCPDFRIIILQDQKIRRIPKLYGEKYWKETPNPIILRLPNRFEQKIYWVESNGQILLQKNWISFAKQLSHGCVLTFKYIGGSHFKVKIFGPNGLEINYSNIKSVYEEVVEATEKAKEIIEVRDESDEEIEISRQARNGGKRKFQGRNQGNMVKKATKYPTNEAVNDENPFFEVVMTKSYVDGNFMWIPTKFSREHLNNYNGISTLSVGKDDPIKMNIRYNDNTEKSMMGGAWKLFSQNYNLEIGDSCKFKMTQRRPPSFITIINRARKGPNPKNLQGISYDNNIAKRRDIGGTSRGRPKVHFDEDSEGGNMMKHFKIFVKDNHHYPNLPKEFNRIGCDDNRVELKIGRKSWSVKVNYFHSTKRSRFGDGWGPFIEECNLIGETCLVKNLRMVTVFMKIEYLVTFENSILLRNLRIKILRGKSKTLRILGAIKNGAGKLSLREDNCMLGMGSGQPNRTENIRIAMMKAGADVKGAVLARDAFFPFAWKDAVEEACEMSYFSALVV 508
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g01650 508 Gene3D - 306 405 IPR015300 -
Tsu05g01650 508 Gene3D - 154 271 IPR015300 -
Tsu05g01650 508 SUPERFAMILY Cytidine deaminase-like 445 499 IPR016193 GO:0003824
Tsu05g01650 508 SUPERFAMILY DNA-binding pseudobarrel domain 10 97 IPR015300 -
Tsu05g01650 508 Gene3D - 429 503 IPR024051 -
Tsu05g01650 508 SUPERFAMILY DNA-binding pseudobarrel domain 320 386 IPR015300 -
Tsu05g01650 508 SUPERFAMILY DNA-binding pseudobarrel domain 168 257 IPR015300 -
Tsu05g01650 508 ProSiteProfiles B3 DNA-binding domain profile. 174 271 IPR003340 GO:0003677
Tsu05g01650 508 PANTHER B3 DOMAIN-CONTAINING 4 270 - -
Tsu05g01650 508 CDD B3_DNA 173 258 IPR003340 GO:0003677
Tsu05g01650 508 Gene3D - 4 97 IPR015300 -
Tsu05g01650 508 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 4 270 - -
Tsu05g01650 508 SMART B3_2 175 270 IPR003340 GO:0003677
Tsu05g01650 508 SMART B3_2 9 96 IPR003340 GO:0003677
Tsu05g01650 508 Pfam B3 DNA binding domain 175 259 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g01650 Tsu-Chr5 16438426 16442702 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g01650 4 313 REM Transcription Factor Family AT4G31640 22.531 1.95e-06 48.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Tsu05g01650 B3 3.1e-10 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g01650 K00602 - mtr:MTR_1g035570 374.4