Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Tsu05g01648 | ATGTCAAATTATTGCCCTAAAGAGTTCTTCAAGATAGTGCAAAATCATGAACTACACAACGGAGAGCTTAGACTTCCTAAGAAATTTGTGAAGAATCATTGGAAAGGAATATCAAATCCAGTAGTCCTTAAACTCCCAAATGTTGCTCCGCAAGAAATATCTTGGGCGAAGCGCGACGGCGATATTTGGCTTCAAAAGAATTGGGAAAATATTGCAAAGTTTCTTAAACTTGGATATGTTGTACTTTTTAATTACAAAGGAAAATCATATTTTGAGGTTAAGATATTTGGTCTCAATACATTGGAAATAGATTATTCCAATATAACAAAATTCATAGATGAAAGTTGTGAAACTATTGCTAATgtgagtgatgatgatgatgatgatgatgatgataagaGTTTATATGGAGAAATGGATGGTGTTGGTAGTAAAAGAGGTAGGAAGGCTAAGAAATGTTCAACAAGTGGAGCTGTTAATGTGAATCCAAGTTTTGAAGTGAAATTGTCAAAAACTTATGCCTTGCCCAATGGCTATATATTGAGGCTACCAAGTGAGTTTTCTCAAAAATACTTGAACGGGTATAATGGGACTGCAAGCATTAGAGTTGGTGAGGACATAGCTATGGAAGTGATTTTGAGGTTTCAAGATATCGATAATAATAGAACATCATTTATATCCGACGGTTGGAAACCagttattcaaaaatataactTGCAAGTTGATGATAGATGTAAATTTAAGATGATTCAACAACACCCACCTTCATTCACTCTTACTATTGGagGAATGATCTCTTCTTGTGATAATAATATTGGGAAGAGAAGAGCCATTGAAGGAACATCTAGGAGCTGCCATGTTCAATCGAATTTAGAAGGTTGTAATGTGATTGAATCACACATAATCGAGATTTGTGTGAGCTCTAACTATCAAGAATCATAG | 942 | 0.328 | MSNYCPKEFFKIVQNHELHNGELRLPKKFVKNHWKGISNPVVLKLPNVAPQEISWAKRDGDIWLQKNWENIAKFLKLGYVVLFNYKGKSYFEVKIFGLNTLEIDYSNITKFIDESCETIANVSDDDDDDDDDKSLYGEMDGVGSKRGRKAKKCSTSGAVNVNPSFEVKLSKTYALPNGYILRLPSEFSQKYLNGYNGTASIRVGEDIAMEVILRFQDIDNNRTSFISDGWKPVIQKYNLQVDDRCKFKMIQQHPPSFTLTIGGMISSCDNNIGKRRAIEGTSRSCHVQSNLEGCNVIESHIIEICVSSNYQES | 313 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Tsu05g01648 | 313 | PANTHER | B3 DOMAIN-CONTAINING | 150 | 260 | - | - | |
| Tsu05g01648 | 313 | CDD | B3_DNA | 7 | 96 | IPR003340 | GO:0003677 | |
| Tsu05g01648 | 313 | SUPERFAMILY | DNA-binding pseudobarrel domain | 5 | 99 | IPR015300 | - | |
| Tsu05g01648 | 313 | CDD | B3_DNA | 163 | 250 | IPR003340 | GO:0003677 | |
| Tsu05g01648 | 313 | Gene3D | - | 2 | 100 | IPR015300 | - | |
| Tsu05g01648 | 313 | PANTHER | TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED | 7 | 135 | - | - | |
| Tsu05g01648 | 313 | SUPERFAMILY | DNA-binding pseudobarrel domain | 162 | 253 | IPR015300 | - | |
| Tsu05g01648 | 313 | PANTHER | TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED | 150 | 260 | - | - | |
| Tsu05g01648 | 313 | SMART | B3_2 | 9 | 99 | IPR003340 | GO:0003677 | |
| Tsu05g01648 | 313 | SMART | B3_2 | 165 | 265 | IPR003340 | GO:0003677 | |
| Tsu05g01648 | 313 | Gene3D | - | 144 | 263 | IPR015300 | - | |
| Tsu05g01648 | 313 | PANTHER | B3 DOMAIN-CONTAINING | 7 | 135 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Tsu05g01648 | Tsu-Chr5 | 16401160 | 16403470 | Dispersed/Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Tsu05g01648 | 121 | 280 | B3 DNA Binding Superfamily | AT3G18990 | 28.571 | 4.67e-07 | 48.9 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Tsu05g01648 | - | - | mtr:MTR_1g050845 | 335.495 |