Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g01640 atgGAGTCAAACGGTGTCGTTTCTATTGGTGTTGATTCTCATGAAGTTCATGTTTTAGCCGTTGATGATAGTcttgttgatcggaaagttattgAACGGTTGCTCAAAATTTCAGCTTGTAAAgTTACTGCTGTGGATAGTGGAATCAGAGCATTACAATTTCTGGGTTTGGATGAACAGAGAAAGACTTCTGAATCAGATGATTTTGTGCCGGGTTTGAAGGTGGATCTAGTCATTACAGATTATTGCATGCCAGGAATGACTGGTTATGAGTTGCTTAAGAAAATCAAGGAATCATCCACTTTTAAAGAAATTCCAGTAGTGATTATGTCTTCTGAAAACATTTTGCCACGCATAGACAgatgtttggAGGAAGGAGCAGAGGATTTTATAGTGAAGCCGGTGAAATTATCAGATGTGAAACGTTTGAAGGGTTACATGACAACTAGGGACGTTAGAGCGGGAAGCCAAGAAAATGGAGAACTTAATGTTAACGCTAACGGTGGAAGTGGATGTGGTGGAGTAGCaatcaacaacaaaagaaaGCTAGAGGAATCATCTGATATCTCATCGTCACCACTGTCcgattcatcatcttcatcaccattGTCCATTTCATCATCACCGTCACCTTCATCATCTCCTATGTCTTCACCCGGCATGCTGGATTCTCCAATCCGACGGCTTAAAATGACCGGCACCGAATGA 708 0.3743 MESNGVVSIGVDSHEVHVLAVDDSLVDRKVIERLLKISACKVTAVDSGIRALQFLGLDEQRKTSESDDFVPGLKVDLVITDYCMPGMTGYELLKKIKESSTFKEIPVVIMSSENILPRIDRCLEEGAEDFIVKPVKLSDVKRLKGYMTTRDVRAGSQENGELNVNANGGSGCGGVAINNKRKLEESSDISSSPLSDSSSSSPLSISSSPSPSSSPMSSPGMLDSPIRRLKMTGTE 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g01640 235 PANTHER TWO-COMPONENT RESPONSE REGULATOR 10 234 IPR045279 GO:0009736
Tsu05g01640 235 CDD REC_typeA_ARR 18 143 - -
Tsu05g01640 235 Pfam Response regulator receiver domain 18 140 IPR001789 GO:0000160
Tsu05g01640 235 Gene3D - 16 185 - -
Tsu05g01640 235 SMART REC_2 16 147 IPR001789 GO:0000160
Tsu05g01640 235 MobiDBLite consensus disorder prediction 188 220 - -
Tsu05g01640 235 SUPERFAMILY CheY-like 16 142 IPR011006 -
Tsu05g01640 235 PANTHER TWO-COMPONENT RESPONSE REGULATOR ARR3-RELATED 10 234 - -
Tsu05g01640 235 ProSiteProfiles Response regulatory domain profile. 17 148 IPR001789 GO:0000160
Tsu05g01640 235 MobiDBLite consensus disorder prediction 183 235 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g01640 Tsu-Chr5 16321713 16323302 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g01640 11 227 Response Regulator Gene Family AT1G59940 58.036 4.29e-77 233
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Tsu05g01640 Response_reg 5e-21 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g01640 K14492 - gmx:100779833 299.286
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g01640 05 16321713 16323302 Tsu05g01640 05 16321713 16323302 ECH