Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g01609 ATGCCAACCCTTGTTCAATTCTTGATATCAATTTTTATACTACTGTTGCTTTTTGTGCAAGTTTCATCCCAAGTTAACCAGTTCTTGTATGCAGGATTCAAGGATATTGGTCCTAACAATCTAACCTTGGATGGATTTGCAAAGATAGAGAAAAATGGGATAATAAGATTAACAAATCACACAAACAATATTACAGGTCATGCTTTTTATCCACTACCTTTTCAGCTAAAGAACTTAACAGCTGGTAAAgctttctctttttcttcatcttttgcTCTTGCTGTTGTCCCTCAGTATCCTAACATAGGTGGTCATGGCATGGCTTTCACAATAGCAACTACTAAGAATCTTAAAGGTTTACCTATTCAATATCTTGGTCTATTCAATTCAAGTAATGTTGGTAATTTCTCTAACCATCTTTTTGCTGTTGAGTTTGATACTGTCCAAGACTTTGGATTTGATGATATCAATGATAACCATGTTGGAATAGACATCAATGGTTTGAAATCCAATGCATCTGTTATTGCTGGCTATTACACTGACAATGATTCAACCAAACAATATTTTAATATCAAAAGTGGTAAACCAATTCTAGCTTGGGTTGATTATGATTCTTCATTGAATCTTGTAAGTGTTACACTTTCTTCAACTTCAAGCAAACCCAAAAAACCAACTTTGTCATTTCATGTGGATTTATCACATGTTTTTCATGATACTATGTATGTTGGATTCTCTGCATCAACTGGTTTGCAGCTTGCTAGCTCTCATTACATCTTGGGTTGGAGTTTTAGAGTTAATGGACCAGCACCATCACTTGATTTGTCTTCACTTCCACAACTTACACaaccaaagaagaaaaatgctTCTTTGATAATTGGTGTTTCGGTCACGGTTTCGTTTGTTGTATTGTGTTCTATAGCAATTGGTATTTACattttcagaaaaataaaaaatgctgaTGTAATAGAATCATGGGAGCTTGAAGTTGGACCACATAGATACTCCTATCAAGAACTCAATAAAGCTACAAAAGGTTTCAAAGAGAAAGAGTTACTTGGGCAAGGTGGTTTCGGCAGAGTTTACAAAGGGACATTGCCAAATTCAGATATTCAAGTAGCTGTTAAGAGAGTTTCACATGAATCAAAACAAGGGCTAAGAGAATTTGTCTCTGAAATCGCCAGCATAGGCCGGCTCCGCCATAGGAATTTGGTACGGTTACTCGGATGGTGTCGCTGCAAAGGTGATCTCTTACTTGTGTATGACTTCATGGCTAATGGAAGCTTAGATAAGTACTTATTTGAAAAGACAGAAATTGCATTAACTTGGGAACAAAGATTTAAGATAATAAAGGGTGTTGCTTCAGCTCTTTTGTATCTACATGAAGGCTATGAACAAGTGGTAATACATAGAGATGTTAAAGCTAGCAATGTTCTTTTAGATTTTGAACTTAATGGAAGATTAGGTGATTTTGGTTTGGCAAGGTTATGTGAACATGGTGATAATCCAGGTACCACAAGAGTGGTAGGAACCTTAGGCTATTTGGCACCAGAGTTACTTAGAACAGGAAAAGCATCTACAAGTTCTGATGTTTTTGCATTTGGTGCATTTCTTCTTGAGGTTGCTTGTGGGAGAAGGCCTATTGAGCCTAAGGCATTACAAGAAGAGTTAGTGTTAGTGGATTGGGTTTGGGAAAGGTACAAAGAAGGAAGAATACTTGAAGTAGTGGATCctaaattgaataatttttttgatgaaaGTGAGGTAGTGATGGTGTTGAAATTGGGATTGGTATGTTCAAATGATGTTCCTATTATAAGGCCTAGCATGAGACATGTAATGAGGATTTTGGATGGAGAAGTTGAATTGCCTAATGACTTGAGAAAGCCAGGAGTTATTGATCCACAAGAAGGGTTTGATGAATTTTTGAACTCTCTTACATATTCATCAATTGATATCTTGAGTTCAAGCTCTTATCTTGAAACTAGAGACACTAATACTTGTTATACCTCTTTTGAAAATTCACCTCAATCACTTCTCAATCCTAGAAAATAA 2052 0.348 MPTLVQFLISIFILLLLFVQVSSQVNQFLYAGFKDIGPNNLTLDGFAKIEKNGIIRLTNHTNNITGHAFYPLPFQLKNLTAGKAFSFSSSFALAVVPQYPNIGGHGMAFTIATTKNLKGLPIQYLGLFNSSNVGNFSNHLFAVEFDTVQDFGFDDINDNHVGIDINGLKSNASVIAGYYTDNDSTKQYFNIKSGKPILAWVDYDSSLNLVSVTLSSTSSKPKKPTLSFHVDLSHVFHDTMYVGFSASTGLQLASSHYILGWSFRVNGPAPSLDLSSLPQLTQPKKKNASLIIGVSVTVSFVVLCSIAIGIYIFRKIKNADVIESWELEVGPHRYSYQELNKATKGFKEKELLGQGGFGRVYKGTLPNSDIQVAVKRVSHESKQGLREFVSEIASIGRLRHRNLVRLLGWCRCKGDLLLVYDFMANGSLDKYLFEKTEIALTWEQRFKIIKGVASALLYLHEGYEQVVIHRDVKASNVLLDFELNGRLGDFGLARLCEHGDNPGTTRVVGTLGYLAPELLRTGKASTSSDVFAFGAFLLEVACGRRPIEPKALQEELVLVDWVWERYKEGRILEVVDPKLNNFFDESEVVMVLKLGLVCSNDVPIIRPSMRHVMRILDGEVELPNDLRKPGVIDPQEGFDEFLNSLTYSSIDILSSSSYLETRDTNTCYTSFENSPQSLLNPRK 683
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g01609 683 ProSitePatterns Serine/Threonine protein kinases active-site signature. 467 479 IPR008271 GO:0004672|GO:0006468
Tsu05g01609 683 PANTHER - 8 666 - -
Tsu05g01609 683 Gene3D - 24 272 - -
Tsu05g01609 683 CDD STKc_IRAK 352 618 - -
Tsu05g01609 683 ProSiteProfiles Protein kinase domain profile. 346 622 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu05g01609 683 CDD lectin_legume_LecRK_Arcelin_ConA 27 267 IPR001220 GO:0030246
Tsu05g01609 683 PANTHER L-TYPE LECTIN-DOMAIN CONTAINING RECEPTOR KINASE S.4 8 666 - -
Tsu05g01609 683 SUPERFAMILY Concanavalin A-like lectins/glucanases 27 284 IPR013320 -
Tsu05g01609 683 SMART serkin_6 346 659 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu05g01609 683 Gene3D Phosphorylase Kinase; domain 1 331 422 - -
Tsu05g01609 683 SUPERFAMILY Protein kinase-like (PK-like) 328 633 IPR011009 -
Tsu05g01609 683 Pfam Legume lectin domain 27 277 IPR001220 GO:0030246
Tsu05g01609 683 ProSitePatterns Protein kinases ATP-binding region signature. 352 375 IPR017441 GO:0005524
Tsu05g01609 683 Pfam Protein kinase domain 346 550 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu05g01609 683 Gene3D Transferase(Phosphotransferase) domain 1 423 630 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g01609 Tsu-Chr5 15804134 15806185 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g01609 21 682 Receptor kinase-like Gene Family AT3G55550 57.675 0.0 749
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Tsu05g01609 Pkinase 2.8e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g01609 - - gmx:100784346 986.097