Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g01565 ATGTCGATTTCCTACTCCAACTTCTTCTCCGATTCCGACCTCCTATGCGGCGAGGAGACATCTAGCATCTTGTCCTCAGATTCGCCGACGGATTGCTTTTCCGATGTCGATTCGTCTCCGCCGCCGGAGGATGAGTTCATCGCCGGATTAATTGAAGACGAACGTAAGTTCGTTCTCGGATTCGATTATTTCTCTAAGTTACAGTCTCGTTCGCTCGATTCCACCGCTAGAGATGAATCCATTGCATGGATCCTAAAGGTGCAGGCTTATTATGGATTTCAACCGCTTACGGCTTATCTTGCCGTCAACTACATGGATCGGTTTTTGAACAATCGGCGGTTGCCGCAAACAAATGGGTGGCCATTGCAACTTCTATCAGTTGCTTGCTTGTCTTTAGCGGCTAAATTGGAGGAAACTCTAGTCCCTTCTCTATTGGACCTTCAGGTAGAAGGTGCCAAATACTTATTTGAGTCAAAAACAATTAGAAGAATGGAGCTACTTGTTCTAAGCATCTTGGATTGGAGGCTAAGATCAGTTACCCCATTTAGTTTCCTAAGTTTCTTTGCATGCAAGTTAGATACAACTGGAACTTTCACTGGGTTCCTCATTTCACATGCTTCACAAATTATCTTATCTAATATCCAAGAGGCCAGCTTTCTTGCATATTGGCCATCATGCATTGCTGCCGCGGCTATACTCCATGCAGCTAACGAAATTCCTAATTGGTCTCTCGTTAAGCCCGAGCATGCTGAGTCGTGGTGCGAGGGATTAAGAAAAGAGCAAATTATGGGGTGCTACAGGTTAATGCAACAACATGTGATTGACAGTAACCAAAGGAAAGCTCCTAAAGTGTTGCCACAGCTGCGAGTGACAACTCAGCCTTTTGTGAGGTCATGTGTCTCATCATCCTCCTCTTCTCCTTCCTCCTCATCTCCCTATAAAAGAAGGAAATTAAATAATTGTTTATGGGTAGATGATGACAAAGGATCAAACTCTccatga 1002 0.4401 MSISYSNFFSDSDLLCGEETSSILSSDSPTDCFSDVDSSPPPEDEFIAGLIEDERKFVLGFDYFSKLQSRSLDSTARDESIAWILKVQAYYGFQPLTAYLAVNYMDRFLNNRRLPQTNGWPLQLLSVACLSLAAKLEETLVPSLLDLQVEGAKYLFESKTIRRMELLVLSILDWRLRSVTPFSFLSFFACKLDTTGTFTGFLISHASQIILSNIQEASFLAYWPSCIAAAAILHAANEIPNWSLVKPEHAESWCEGLRKEQIMGCYRLMQQHVIDSNQRKAPKVLPQLRVTTQPFVRSCVSSSSSSPSSSSPYKRRKLNNCLWVDDDKGSNSP 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g01565 333 Gene3D - 50 240 - -
Tsu05g01565 333 PANTHER CYCLINS 1 322 IPR039361 -
Tsu05g01565 333 MobiDBLite consensus disorder prediction 21 35 - -
Tsu05g01565 333 Pfam Cyclin, N-terminal domain 49 176 IPR006671 -
Tsu05g01565 333 SUPERFAMILY Cyclin-like 37 176 IPR036915 -
Tsu05g01565 333 SMART Cyclin_C_2 179 308 IPR004367 -
Tsu05g01565 333 SMART cyclin_7 82 170 IPR013763 -
Tsu05g01565 333 MobiDBLite consensus disorder prediction 21 41 - -
Tsu05g01565 333 Pfam Cyclin, C-terminal domain 179 288 IPR004367 -
Tsu05g01565 333 SUPERFAMILY Cyclin-like 161 274 IPR036915 -
Tsu05g01565 333 Gene3D - 60 177 - -
Tsu05g01565 333 ProSitePatterns Cyclins signature. 77 108 IPR006671 -
Tsu05g01565 333 PANTHER CARBOXY-TERMINAL DOMAIN CYCLIN 1 322 - -
Tsu05g01565 333 CDD CYCLIN 81 169 IPR013763 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g01565 Tsu-Chr5 15203281 15207889 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g01565 1 332 Core Cell Cycle Gene Families AT1G70210 62.388 8.07e-137 390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g01565 K18810 - gmx:100775224 500.745