Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g01554 ATGGCTGAAGCTGTTCTTGAAGTTGTGCTTAACAATTTGACATCACTCATTCATAAGGAGATTTCCATATTTCTTGGTTTCCATCAAGACTTTAATACTCTTTCCAGCTTGCTTACTACAATCAAGGCTACTCTTGATGATGCCGAGGAGCAACAATTCTCGAATAGAGCCATCAAGGATTGGCTTCTTAAGCTCAAAGATGCTGCTCATGTCCTCGATGACATCTTGGACGAGTGTGCCACCCAAGCATTGGAATTGGAGTATGGAGGATTTAACTGTGGACCTTCACACAAGGTACAAAGCTCTTGCTTATCTTCTATTCACCCCAAGCATGTTTCTTTCCGTTACAAAATTgctaagaaaatgaaaatgattagAGAGAGGTTAGACGAAATAGCTGAAGAAAGGAGTAAGTTTCATTTGACTGAGATAGCCAGAGAGAGGAGAAGCCGAGTCCTTGATTGGCGACAAACCACCTCAATCATTACTGAGCCTCAAGTCTATGGAAGAAATGaagataaagataaaattattgattttatgGTTGGCGATGCTTGTCGTTTTGAGGGTTTATCTGTCTATCCAATTGTGGGTCTAGGTGGACTTGGAAAAACAACACTTGCTCAACTTATCTTCAATAACGAAAGAGTGGTCAAACACTTTGAGCTTAGAATGTGGGTGTGTGTTTCAGAAGATTTTAGTTTGAAGAGAATGACAAAAGCTATCTTAGAATCTGCATCTGGGCACGCCTATGAGGATTTAGATCTAGAGTTGTTGCAGAGAAAACTTCTAGATTTTATACAAAGAAAAAGATTTTTACTAGTATTAGATGATGTGTGGGATGATAAACAAGAGAATTGGCAGAGGTTGAGATCTGTATTGGCTTGCGGAGGAAAGGGTGCTTCAATTTTGATTACTACTCGTCTTGAAAAGGTTGCAGAAATCATGGGAACGGTACCACTGCATGATATATCAAAGCTATCTGACAAAGATTGTTGGGAATTGTTTAAACAACGAGCCTTTGCACAAAATGAGGAAGAAGCAGCGGAGCTTGTGGTTATAGGACGAGAGATAATAAAAAAGTGTGGGGGAGTGCCTCTTGCGGCAATAGCACTAGGCAGTCTCTTGCGTTTTAAAAGAAGGGAAACAGAGTGGCTCTATGTCAAGGAAAGCAAGTTATGGAGCTTACAAGATGAAGATTATGTCATGCCCGCCTTGAGATTAAGTTACTTGAATTTGCCAGTAAAATTGAGACAATGTTTTGCTTTCTGTGCGCTATTTCCCAAAGATGAAAGAATCAGTAAGCAGTTTCTAATCGAGCTTTGGATGGCTAATGGCTTTATTTCACCGAATGAAATGTTGGACGAGGAAGATATTTGCAATGAAGCGTGGAATGAATTATACCGGAGGTCATTTTTCCAAGATATTGAGAAAGATGGATTTGGAAACATTACAAAGTTCAAGATGCACGATCTTGTTCATGATCTTGCTCAATCTGTTTCAGAAGAGTTAGATCATTGTTCTAGTCTCCGATATTTGCCTAATAATTTGATACACTTGAAAGCTCTACAACATCTATCATTGAATTACTGCACGGCTCTATCAAGCTTGCCTCCTAAAATAGGGAAATTGAATTCCTTGAGGACTTTGAGCATGTACATAGTTGGAAAGGAAAAAGGGTTCTTTTTGGCAGAATTAGGACAATTAAATCTTAAAGGAGAGCTTCACATCAAGCACCTTGAGAGAGTGAAAAGTGTAGAAGATGCTAAAAAAACCAACATGTTGAGTAAGCACCTGAGCCATTTGCAGTTGTCATGGGAGAGAACTGAAGAGTCCCAATTGCAGGAAAATGTCGAGAACATTCTTGAAGTGCTTCAACCAGCTCATACCCAAAAGCTTCAAGGATTGTGTGTTGAAGGGTATACAGGTGCCCGATTCCCACGGTGGATGTCTAGTCCTTCTCTTAAAGATTTAAATTCTTTAAAGCTCGTAGGATGCCAAAGCTGTTTACATCTCCCAAAGTTGGCGAAACTACGTTCTCTTAAGGAACTTACTATATCCAGCATGAGTCGTGTAATATATGTAGACGAGGATTCGCATGGTGGTGGAGTTGCAGGATGTTTCATAGcactaaaaaaattgtcactGAAGAAGCTGCCAAACCTGATAAGATTATCGAGGGAGGATAGGGATAATATGTTTCCACACCTTTCACAACTTCAAATAATTGAATGTCCTAATTTGTTGGGCTTGAATTGCATTCCATCTCTCAATAGCATGCGTATAGAAGGGAAATGCAACCAACACTTACTAAGTTCAATTCATAAACTCGGTAGTCTTGCAACCCTTGTGTTAGACGATATTAAAGACCTAACTTGTCTTTCAGATGGGATGCTTAGAAACCTCACTTCTCttaaaaaattgatgatttGGAGTTGCTCGCAAATAGAAGGTTTGGATGAGGCTTTACAACATGTGACTGCCCTTCAATCTTTATCACTGGGGGATCTTCCAAACCTGGCATCCTTGCCTGATTCGTTAGGAAACCTTAGTTCACTTCAGGAACTAGAGATTTTGAATTGTTTGAAGTTGAAGTGTCTTCCGACGAGCATTCAAAGCCTTACTGGTCTGAAAAGCTTGGAAATTTGGGGTTGCAGTGAGTTAGGGAAACGCTGTGAAAAGGAAATAGAGGAGAATACTCTAGTGTTGCAGAAAGGAGAAGGTACACCTCTTCAAGGACTTCGACTAGCCACTGTAACACCACATCTTGATTTGCAAGATAAACTGCCAATTCAATCTAGAGGGGGACTACATCAAGAGAACAACCAAGGCGTAATGAGTCCATTGTCACATCAACTAATGGAATCTAAGGCTCATGCGATAATTCATATGCAATCTAAGGCTCATGCGATAAAAGACTCTGTTGGAAAGGAATAA 2937 0.3919 MAEAVLEVVLNNLTSLIHKEISIFLGFHQDFNTLSSLLTTIKATLDDAEEQQFSNRAIKDWLLKLKDAAHVLDDILDECATQALELEYGGFNCGPSHKVQSSCLSSIHPKHVSFRYKIAKKMKMIRERLDEIAEERSKFHLTEIARERRSRVLDWRQTTSIITEPQVYGRNEDKDKIIDFMVGDACRFEGLSVYPIVGLGGLGKTTLAQLIFNNERVVKHFELRMWVCVSEDFSLKRMTKAILESASGHAYEDLDLELLQRKLLDFIQRKRFLLVLDDVWDDKQENWQRLRSVLACGGKGASILITTRLEKVAEIMGTVPLHDISKLSDKDCWELFKQRAFAQNEEEAAELVVIGREIIKKCGGVPLAAIALGSLLRFKRRETEWLYVKESKLWSLQDEDYVMPALRLSYLNLPVKLRQCFAFCALFPKDERISKQFLIELWMANGFISPNEMLDEEDICNEAWNELYRRSFFQDIEKDGFGNITKFKMHDLVHDLAQSVSEELDHCSSLRYLPNNLIHLKALQHLSLNYCTALSSLPPKIGKLNSLRTLSMYIVGKEKGFFLAELGQLNLKGELHIKHLERVKSVEDAKKTNMLSKHLSHLQLSWERTEESQLQENVENILEVLQPAHTQKLQGLCVEGYTGARFPRWMSSPSLKDLNSLKLVGCQSCLHLPKLAKLRSLKELTISSMSRVIYVDEDSHGGGVAGCFIALKKLSLKKLPNLIRLSREDRDNMFPHLSQLQIIECPNLLGLNCIPSLNSMRIEGKCNQHLLSSIHKLGSLATLVLDDIKDLTCLSDGMLRNLTSLKKLMIWSCSQIEGLDEALQHVTALQSLSLGDLPNLASLPDSLGNLSSLQELEILNCLKLKCLPTSIQSLTGLKSLEIWGCSELGKRCEKEIEENTLVLQKGEGTPLQGLRLATVTPHLDLQDKLPIQSRGGLHQENNQGVMSPLSHQLMESKAHAIIHMQSKAHAIKDSVGKE 978
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g01554 978 Gene3D - 149 319 IPR027417 -
Tsu05g01554 978 Pfam NB-ARC domain 173 410 IPR002182 GO:0043531
Tsu05g01554 978 CDD RX-CC_like 2 134 IPR038005 -
Tsu05g01554 978 Gene3D - 326 408 IPR042197 -
Tsu05g01554 978 PANTHER OS05G0414200 PROTEIN 32 818 - -
Tsu05g01554 978 Gene3D - 409 500 IPR036388 -
Tsu05g01554 978 Pfam Rx N-terminal domain 5 97 IPR041118 -
Tsu05g01554 978 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 150 424 IPR027417 -
Tsu05g01554 978 Gene3D Ribonuclease Inhibitor 563 759 IPR032675 -
Tsu05g01554 978 Gene3D - 5 133 - -
Tsu05g01554 978 PRINTS Disease resistance protein signature 362 376 - -
Tsu05g01554 978 PRINTS Disease resistance protein signature 193 208 - -
Tsu05g01554 978 PRINTS Disease resistance protein signature 848 864 - -
Tsu05g01554 978 PRINTS Disease resistance protein signature 266 280 - -
Tsu05g01554 978 PANTHER DISEASE RESISTANCE PROTEIN RP 32 818 IPR044974 GO:0006952
Tsu05g01554 978 Gene3D Ribonuclease Inhibitor 760 928 IPR032675 -
Tsu05g01554 978 SUPERFAMILY L domain-like 502 889 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g01554 Tsu-Chr5 15023882 15027523 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g01554 196 476 WRKY Transcription Factor Family AT5G45050 24.752 4.20e-07 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g01554 - - gmx:100812831 839.336