Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g01542 ATGATCTACAAAGGTGCAACATGTGGAGTTGGAGCTGCACTCATCCTAGCAACAGTGGCATTTCTTCTATACAAACGCCACAAACGTATATTAGAAGCACAACAACGACTAGCCAAAGAGCGTGAAGGAATTCTAAACGCAAGTGGTGGAGGAAAAGCCGCCAAACTTTTCTCCGGCAAAGAGATAAAAAAAGCCACAAATGATTTCTCAGCTGATCGCCTCCTTGGAGTTGGCGGCTATGGTGAAGTCTACAAAGGCGTTCTTTCAGATGGAACCAATGTAGCTGTTAAATGTGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCTAAACTCGGAAACCCAAAAGGCACTGACCAAGTCCTCAACGAAGTTCGCATATTATGCCAAGTTAACCACAGAAACCTCGTTGGTTTACTTGGTTGCTGCGTCGAATTGGAACAACCAATTTTGGTTTATGAGTTCATAGAAAATGGGACCCTTCATGATCATTTAACAGGTCAAATGCCAAAGGGCCGTGCTTCACTTAATTGGAACAATCGTCTTCACATTGCTCGCGATACTTCTGAAGGTCTTTCTTACTTTCACTTCATGGCAGTGCCACCGATTTACCACAGAGATGTTAAATCAAGCAACATTCTTCTAGATTTCAAGATGAACGCCAAGGTTTCGGATTTCGGGTTATCTCGTTTGGCTCAAACGGATATGAGTCATATCTCAACTTGTGCTCAAGGGACACTTGGTTACCTTGATCCTGAGTATTATAGAAACTATCAGTTAACTGATAAGAGTGATGTTTATAGTTTCGGAGTTGTGTTGCTTGAGCTTTTGACTTCTCAGAAGGCGATAGATTTTAACAGGGCTTCGGATGATGTGAACTTGGCAGTTTATGTGCAGAGAATGATGGATGAAGAGAAGTTGATAGAGGTTATCGATCCTGTTTTGAAAAATGGGGCTAGTAATATAGAGCTTGATACTATGAAGGCTTTGGCTTTTTTGGCGTTGGGCTGTTTGGAAGAGAAAAGACAGAATCGACCTTCAATGAAAGAGGTGTCGGAAGAGATTGAGTATATTATCAGTATTGCCTCTGCAAAGGGAGTGGCGAAAGAGGTGTCAAAGTAG 1335 0.3453 MIYKGATCGVGAALILATVAFLLYKRHKRILEAQQRLAKEREGILNASGGGKAAKLFSGKEIKKATNDFSADRLLGVGGYGEVYKGVLSDGTNVAVKCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAKLGNPKGTDQVLNEVRILCQVNHRNLVGLLGCCVELEQPILVYEFIENGTLHDHLTGQMPKGRASLNWNNRLHIARDTSEGLSYFHFMAVPPIYHRDVKSSNILLDFKMNAKVSDFGLSRLAQTDMSHISTCAQGTLGYLDPEYYRNYQLTDKSDVYSFGVVLLELLTSQKAIDFNRASDDVNLAVYVQRMMDEEKLIEVIDPVLKNGASNIELDTMKALAFLALGCLEEKRQNRPSMKEVSEEIEYIISIASAKGVAKEVSK 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g01542 444 ProSitePatterns Serine/Threonine protein kinases active-site signature. 274 286 IPR008271 GO:0004672|GO:0006468
Tsu05g01542 444 SMART serkin_6 69 429 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu05g01542 444 PANTHER OS05G0318100 PROTEIN 180 435 - -
Tsu05g01542 444 Gene3D Phosphorylase Kinase; domain 1 181 226 - -
Tsu05g01542 444 ProSiteProfiles Protein kinase domain profile. 69 429 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu05g01542 444 SUPERFAMILY Protein kinase-like (PK-like) 54 425 IPR011009 -
Tsu05g01542 444 Gene3D Transferase(Phosphotransferase) domain 1 227 441 - -
Tsu05g01542 444 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 180 435 IPR045274 GO:0007166
Tsu05g01542 444 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 7 99 IPR045274 GO:0007166
Tsu05g01542 444 PANTHER OS05G0318100 PROTEIN 7 99 - -
Tsu05g01542 444 Coils Coil 181 182 - -
Tsu05g01542 444 Gene3D Phosphorylase Kinase; domain 1 46 108 - -
Tsu05g01542 444 Pfam Protein tyrosine and serine/threonine kinase 189 425 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g01542 Tsu-Chr5 14901497 14903564 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g01542 32 97 Receptor kinase-like Gene Family AT5G02070 51.515 2.03e-16 79.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Tsu05g01542 PK_Tyr_Ser-Thr 4.8e-38 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g01542 - - gmx:100305415 451.825