Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g01541 ATGGCAACCACTCAGTCGGCGGAGCACACAGGGTCACAACATTACAACACACAACAGATGGACAACTCCGGTAAATTTTCAGATGTTAATTTCGATGATGATGGAGATAATGAACATTCTGCTTTTGGTGAAGAAAGTGAAATTATGGAGTCTACAGACCGCAATGTATCTGATGATAGCATTGAGAATTCTGATTCCATTGTAATAGATGGTAGGTTTGTTAGGATTAATTCCATGACGGTGGATGATATTGAGGGTCTTCATTTTGGTAGTGAAAATGACGcttataaattttatgtaaAGTATGCAAGAAGCACCGGTTTCGTTGTTAGGAAACATAATGTGACAAGAAATTGTAGTGGAACGATTGTAACGCGGCAGTTTGTGTGCAACAAGCATGGAGAAAGAAACCCAATACACCTGACGAGGGCTGACAGGGTAAGAGATCATAAACCTATCACCCGGATTAATTGTGAGGCCCACCTTCATATACATTATGATGTAGAGAGGTTGAGATGGGTAGTGATTTCTTTTGAAGTGTGTCATAACCATGAGCTAACACCGtctaaatttattcatttatttcctGCCTACCGTGGAATGACGGATGCCGACAAAGCTCAAATTGACAGCCTGCATTCAGATGGTATCCAAACACGTCATATAATGGGTCACATGGTGGCAAACAAGGGTGGATATGATGCTGTTGGTTTtacaaaaaaagatttgtatAACTATTTTGGCAAGAAAACCATTGTAGATATTAAAGATGGTGATGTCGTTGCTTCTTTAAGCTATCTACGGGGGAAAGCGGGTTTAGATCCTATGTTGTATGCCAAATATACCATCGGTGGGGATGGAAAATTGAAGCGTTTGTTTTGGGCTGATGGACGGAGTCGAAATGACTTTTTGTGGTTTGGCGATGTTATTGCGTTTGACGCCACatataagaaaaacaaatacaattttCCTTTGGTAATCTTTTCTGGCTGCAACAACCATTCACAAACGATTATTTTTGGTGCTGCTTTGGTTTCAGATGAAACAACCGAAACATATAAATGGGTTCTTAGCTCATTTTTAGAAGCAATGGGAAATCGGCAACCAAAAGCTGTAATGACTGATGGTGATTTAGCCATGAGAGAGGCTGTAAGAGTTGTTTTTCCTGAAGCATGTCACAGACTGTGTGCGTGGCATTTGAACAAGAATGCTcaagaaaatgttaaaaataaagattttttgACAGATTTCCAGAAAGCAATGTACTCAAATATGACcgttgatgaatttgaagagtTTTGGTCTAATCTTGTTGAGACGAATGGATTACAAGGTAACAATTGGGTGGCGAAAACATATGAGAACAAGAAATTATGGGCAACTGCCTACTTTCAAGATAAGTTTTTTGGTCGCATGCGGACAACTTCTCAATGTGAAGCCATCAATTCAATGATGAAAAGATATGTTAAAAAGAAATGCAGCATTTATGAGTTTATGCATAAATTTGACCAGGTATTAAGAGAATACAAAAACAATGAACATGTTGCTGATTTTAAAAGTTATAGCTCTGAACCAGCGTTGACAACTGGTTTGGATAGCATCGAGAAGGATGCTTCAAAAATTTACACATTAGAGATgtttaaagaagtaaaaaaccAGATTGTCAAGTCCTCGGCATTAATTGTTTCTGAGCGGGAGGAAGTTGAAGACAAGTTGTTGTTTATATTGACCAAAACATGTGATACAAAATATGTAAAAGAGGTTTTTTATGACACTACAAATTCTTCATTTTACTGTGAATGTAGATTGTTTGAGGCTCGCGGAATTCCATGTTCACatattatttttgtcatgaAAGCAGAACATGTTGACCATATCCCAAGcagtttgattttgaaaagatggactaaaaatgcaaaaattccAATAATGGCACCAAATGTTGGAAAAGGATTAGATTCTAATACGACAGAGGTTGACCGTTGTGGTGCATATTCAGCTGCTTGTAATAGGTTGTGCAAAGTTGCTGCTGAAAGTGGGGCGTGCTTTAATGATGTAATGGATGACATTTTAAAGCTTACTGAAAAGTATAGTAACCTAAAATTGAGAGGTAGTGCTAGGACGCAAAATTCAGAAGTGGACAGACATATTGGTGATCCCGATGCTGTTAATTCTAAAGGTGCTCCACCAAAGAGGAAAAGTTGCCCCATGAAGAGGCCTAAACACTGTACAAATTGTAATGACACTAAACACAATGCTAAGACATGTCGTATGCGTATTGATGTAAATGGATCGCAAATGGAAAATGACAAGGATGCTGCCAAATTTAGCAAGGCAACATATAATTCTGATAAAGAAATCTCTAAAAGCGATTTAAACAACATTCATGGTTCTAATGTGAAGGAAAAAAGTAATTCTAATCCGAAGCAGAAAAAGGCAAAAGACATGAATGAAACTAACCATCACATTGGAGGTCTGCCTATGATGTCCCAAGTACAGCCAAATGCTAATTCAAGCCAAgATAAAGAAATGTCTAGAAGCGATTTAAACAACATTCATGGTTCTaatttgaaggaaaaaagtGATTCTGATCCGAAGCAAGAAAAGGCAAAAGACGGGAATGAAACTAACCATCCCATTGGAGGTTTGTCTATGATGTCCCAAGTACAGCCAAATGCACACGAAATGCATTACCCAACACCTCATTTTGCCAATTCAAGCCAAGTACCTCCTCCTACTTTTGCTACAACTGGTCAAACTCCTACCATTGGTAGTCTGCCTATGATGTCCGTTATGCAGCCAAATGCACAACAAATGTATTATCCAATGTCTTATTTTGCCAATTCAAGTCAAGTACCTCCTCCTATTTATGCTATGAATGGTCAAACTCCTCCTAGTGGAGGTCTGCCTATGATGTCCCAACTGCAGCCAAATACACACCAAATGCAACGCCAGGTACCTGCCTCTACTTTTGCTATAGATGGTCAAACTCCTCCTATTTTACAGCAACCACCACAGTACTTTTTTGGAATGCCGGCAACTAGTAATGGGCCATCTTTTTAG 3063 0.3673 MATTQSAEHTGSQHYNTQQMDNSGKFSDVNFDDDGDNEHSAFGEESEIMESTDRNVSDDSIENSDSIVIDGRFVRINSMTVDDIEGLHFGSENDAYKFYVKYARSTGFVVRKHNVTRNCSGTIVTRQFVCNKHGERNPIHLTRADRVRDHKPITRINCEAHLHIHYDVERLRWVVISFEVCHNHELTPSKFIHLFPAYRGMTDADKAQIDSLHSDGIQTRHIMGHMVANKGGYDAVGFTKKDLYNYFGKKTIVDIKDGDVVASLSYLRGKAGLDPMLYAKYTIGGDGKLKRLFWADGRSRNDFLWFGDVIAFDATYKKNKYNFPLVIFSGCNNHSQTIIFGAALVSDETTETYKWVLSSFLEAMGNRQPKAVMTDGDLAMREAVRVVFPEACHRLCAWHLNKNAQENVKNKDFLTDFQKAMYSNMTVDEFEEFWSNLVETNGLQGNNWVAKTYENKKLWATAYFQDKFFGRMRTTSQCEAINSMMKRYVKKKCSIYEFMHKFDQVLREYKNNEHVADFKSYSSEPALTTGLDSIEKDASKIYTLEMFKEVKNQIVKSSALIVSEREEVEDKLLFILTKTCDTKYVKEVFYDTTNSSFYCECRLFEARGIPCSHIIFVMKAEHVDHIPSSLILKRWTKNAKIPIMAPNVGKGLDSNTTEVDRCGAYSAACNRLCKVAAESGACFNDVMDDILKLTEKYSNLKLRGSARTQNSEVDRHIGDPDAVNSKGAPPKRKSCPMKRPKHCTNCNDTKHNAKTCRMRIDVNGSQMENDKDAAKFSKATYNSDKEISKSDLNNIHGSNVKEKSNSNPKQKKAKDMNETNHHIGGLPMMSQVQPNANSSQDKEMSRSDLNNIHGSNLKEKSDSDPKQEKAKDGNETNHPIGGLSMMSQVQPNAHEMHYPTPHFANSSQVPPPTFATTGQTPTIGSLPMMSVMQPNAQQMYYPMSYFANSSQVPPPIYAMNGQTPPSGGLPMMSQLQPNTHQMQRQVPASTFAIDGQTPPILQQPPQYFFGMPATSNGPSF 1020
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g01541 1020 MobiDBLite consensus disorder prediction 824 852 - -
Tsu05g01541 1020 MobiDBLite consensus disorder prediction 805 819 - -
Tsu05g01541 1020 Pfam MULE transposase domain 309 403 IPR018289 -
Tsu05g01541 1020 MobiDBLite consensus disorder prediction 853 875 - -
Tsu05g01541 1020 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 56 716 IPR031052 GO:0006355
Tsu05g01541 1020 MobiDBLite consensus disorder prediction 1 60 - -
Tsu05g01541 1020 MobiDBLite consensus disorder prediction 27 60 - -
Tsu05g01541 1020 MobiDBLite consensus disorder prediction 1 26 - -
Tsu05g01541 1020 MobiDBLite consensus disorder prediction 785 884 - -
Tsu05g01541 1020 Pfam FAR1 DNA-binding domain 97 187 IPR004330 -
Tsu05g01541 1020 MobiDBLite consensus disorder prediction 705 740 - -
Tsu05g01541 1020 ProSiteProfiles Zinc finger SWIM-type profile. 584 622 IPR007527 GO:0008270
Tsu05g01541 1020 SMART 26again6 597 624 IPR006564 GO:0008270
Tsu05g01541 1020 Pfam SWIM zinc finger 598 618 IPR007527 GO:0008270
Tsu05g01541 1020 PANTHER PROTEIN FAR-RED ELONGATED HYPOCOTYL 3 56 716 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Tsu05g01541 Tsu-Chr5 14889366 14893673 Dispersed/Wgd
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Tsu05g01541 MULE 4.7e-29 CL0219
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g01541 - - ccaj:109792835 964.526